, including all inherited members.
| abort() (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| abort_ (defined in DockingAlgorithm) | DockingAlgorithm | [protected] |
| calcConjugate_(ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| changeProteinOrientation_(System &system, Vector3 euler_ang) (defined in GeometricFit) | GeometricFit | [protected] |
| CONNOLLY enum value (defined in GeometricFit) | GeometricFit | |
| current_round_ (defined in GeometricFit) | GeometricFit | [protected] |
| destroy_() (defined in GeometricFit) | GeometricFit | [protected] |
| doPreTranslation_(ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_a_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_b_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_lower_coord_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_lower_index_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_origin_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_size_index_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_upper_coord_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFT_grid_upper_index_ (defined in GeometricFit) | GeometricFit | [protected] |
| FFTGridMulti_() (defined in GeometricFit) | GeometricFit | [protected] |
| findConnollySurfacePoints_(System &system, ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| findFTDockInsidePoints_(System &system, ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| findFTDockSurfacePoints_(System &system, ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| findInsidePoints_(System &system, ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| findVanDerWaalsSurfacePoints_(System &system, ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| FTDOCK enum value (defined in GeometricFit) | GeometricFit | |
| GeometricFit() (defined in GeometricFit) | GeometricFit | |
| GeometricFit(System &system1, System &system2) | GeometricFit | |
| GeometricFit(Options &new_options) | GeometricFit | |
| GeometricFit(System &system1, System &system2, Options &new_options) | GeometricFit | |
| getConformationSet(Index total_number=0) | GeometricFit | [virtual] |
| getGlobalPeak_(Peak_ *peak_list) (defined in GeometricFit) | GeometricFit | [protected] |
| getMassCenter_(System &system) | GeometricFit | [protected] |
| getOrientation(Index con_num) const | GeometricFit | |
| getProgress() const (defined in GeometricFit) | GeometricFit | [virtual] |
| getRadius_(System &system) | GeometricFit | [protected] |
| getSeparation_(const Vector3 &mat_pos) (defined in GeometricFit) | GeometricFit | [protected] |
| getTranslation(Index con_num) const | GeometricFit | |
| getTranslation_(const Vector3 &mat_pos) (defined in GeometricFit) | GeometricFit | [protected] |
| hasFinished() const (defined in GeometricFit) | GeometricFit | [virtual] |
| initFFTGrid_(ProteinIndex pro_idx) | GeometricFit | [protected] |
| initGridSizes_() (defined in GeometricFit) | GeometricFit | [protected] |
| makeFFTGrid_(ProteinIndex pro_idx) (defined in GeometricFit) | GeometricFit | [protected] |
| optimizeGridSize_(int raw_size) | GeometricFit | [protected] |
| options | GeometricFit | |
| orientations_ (defined in GeometricFit) | GeometricFit | [protected] |
| pause() (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| pause_ (defined in DockingAlgorithm) | DockingAlgorithm | [protected] |
| peak_set_ (defined in GeometricFit) | GeometricFit | [protected] |
| pre_translation_a_ (defined in GeometricFit) | GeometricFit | [protected] |
| pre_translation_b_ (defined in GeometricFit) | GeometricFit | [protected] |
| proceed() (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| PROTEIN_A enum value (defined in GeometricFit) | GeometricFit | |
| PROTEIN_B enum value (defined in GeometricFit) | GeometricFit | |
| ProteinIndex enum name (defined in GeometricFit) | GeometricFit | |
| radius_a_ (defined in GeometricFit) | GeometricFit | [protected] |
| radius_b_ (defined in GeometricFit) | GeometricFit | [protected] |
| setup(System &system1, System &system2, Options &new_options) | GeometricFit | [virtual] |
| setup(System &system1, System &system2) | GeometricFit | [virtual] |
| start() | GeometricFit | [virtual] |
| SurfaceType enum name (defined in GeometricFit) | GeometricFit | |
| system1_ (defined in DockingAlgorithm) | DockingAlgorithm | [protected] |
| system2_ (defined in DockingAlgorithm) | DockingAlgorithm | [protected] |
| system_backup_a_ (defined in GeometricFit) | GeometricFit | [protected] |
| system_backup_b_ (defined in GeometricFit) | GeometricFit | [protected] |
| total_round_ (defined in GeometricFit) | GeometricFit | [protected] |
| translations_ (defined in GeometricFit) | GeometricFit | [protected] |
| VAN_DER_WAALS enum value (defined in GeometricFit) | GeometricFit | |
| wasAborted() const (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| wasPaused() const (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| ~DockingAlgorithm() (defined in DockingAlgorithm) | DockingAlgorithm | [virtual] |
| ~GeometricFit() (defined in GeometricFit) | GeometricFit | |