, including all inherited members.
| AtomIndexMap typedef (defined in KCFFile) | KCFFile | |
| clear() | LineBasedFile | [virtual] |
| close() | File | |
| CONTINUED_LINE (defined in KCFFile) | KCFFile | [static] |
| copy(String source_name, String destination_name, Size buffer_size=4096) | File | [static] |
| copyTo(const String &destination_name, Size buffer_size=4096) | File | |
| createTemporaryFilename(String &temporary) | File | [static] |
| DELIMITER_TAG (defined in KCFFile) | KCFFile | [static] |
| disableTransformation(Transformation transformation) (defined in File) | File | [static] |
| EDGE_TAG (defined in KCFFile) | KCFFile | [static] |
| enableTransformation(Transformation transformation) (defined in File) | File | [static] |
| enableTrimWhitespaces(bool state) | LineBasedFile | |
| ENTRY_TAG (defined in KCFFile) | KCFFile | [static] |
| File() | File | |
| File(const String &name, OpenMode open_mode=std::ios::in) | File | |
| File(const File &file) | File | |
| GenericMolFile() | GenericMolFile | |
| GenericMolFile(const String &filename, File::OpenMode open_mode=std::ios::in) | GenericMolFile | |
| GenericMolFile(const GenericMolFile &file) | GenericMolFile | |
| getField(Index pos=0, const String "es="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const | LineBasedFile | |
| getFileStream() | File | |
| getLine() const | LineBasedFile | |
| getLine() | LineBasedFile | |
| getLineNumber() const | LineBasedFile | |
| getName() const | File | |
| getOpenMode() const | File | |
| getOriginalName() const (defined in File) | File | |
| getSize() | File | |
| getSize(String name) | File | [static] |
| getTransformationManager() | File | |
| getTransformationManager() const | File | |
| getType(String name, bool trace_link) | File | [static] |
| getType(bool trace_link) const | File | |
| gotoLine(Position line_number) | LineBasedFile | |
| has(const String &text) const | LineBasedFile | |
| IndexAtomMap typedef (defined in KCFFile) | KCFFile | |
| initRead_() | GenericMolFile | [protected, virtual] |
| initWrite_() | GenericMolFile | [protected, virtual] |
| is_open_ (defined in File) | File | [protected] |
| is_temporary_ (defined in File) | File | [protected] |
| isAccessible(String name) | File | [static] |
| isAccessible() const | File | |
| isCanonized() const | File | |
| isClosed() const | File | |
| isExecutable(String name) | File | [static] |
| isExecutable() const | File | |
| isOpen() const | File | |
| isReadable(String name) | File | [static] |
| isReadable() const | File | |
| isTransformationEnabled(Transformation transformation) (defined in File) | File | [static] |
| isValid() const | File | |
| isWritable(String name) | File | [static] |
| isWritable() const | File | |
| KCFFile() (defined in KCFFile) | KCFFile | |
| KCFFile(const String &filename, File::OpenMode open_mode=std::ios::in) (defined in KCFFile) | KCFFile | |
| KCFFile(const KCFFile &file) (defined in KCFFile) | KCFFile | |
| line_ | LineBasedFile | [protected] |
| line_number_ | LineBasedFile | [protected] |
| LineBasedFile() | LineBasedFile | |
| LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false) | LineBasedFile | |
| LineBasedFile(const LineBasedFile &f) | LineBasedFile | |
| MODE_APP | File | [static] |
| MODE_ATE | File | [static] |
| MODE_BINARY | File | [static] |
| MODE_IN | File | [static] |
| MODE_OUT | File | [static] |
| MODE_TRUNC | File | [static] |
| move(const String &source_name, const String &destination_name) | File | [static] |
| moveTo(const String &destination_name) | File | |
| name_ (defined in File) | File | [protected] |
| NODE_TAG (defined in KCFFile) | KCFFile | [static] |
| open(const String &name, File::OpenMode open_mode=std::ios::in) | File | |
| open_mode_ (defined in File) | File | [protected] |
| OpenMode typedef | File | |
| operator!=(const LineBasedFile &f) | LineBasedFile | |
| File::operator!=(const File &file) const | File | |
| operator<<(const System &system) | GenericMolFile | [virtual] |
| operator<<(const Molecule &molecule) | GenericMolFile | [virtual] |
| operator=(const KCFFile &file) (defined in KCFFile) | KCFFile | |
| GenericMolFile::operator=(const GenericMolFile &rhs) | GenericMolFile | |
| LineBasedFile::operator=(const LineBasedFile &file) | LineBasedFile | |
| File::operator=(const File &file) | File | |
| operator==(const LineBasedFile &f) | LineBasedFile | |
| File::operator==(const File &file) const | File | |
| operator>>(System &system) | GenericMolFile | [virtual] |
| operator>>(Molecule &molecule) | GenericMolFile | [virtual] |
| original_name_ (defined in File) | File | [protected] |
| parseColumnFormat(const char *format, Position index, Size length, void *arg) | LineBasedFile | |
| read(System &system) | KCFFile | [virtual] |
| read() | KCFFile | [virtual] |
| readDELIMITER_() (defined in KCFFile) | KCFFile | [protected] |
| readEDGE_(IndexAtomMap &index_to_atom) (defined in KCFFile) | KCFFile | [protected] |
| readENTRY_(Molecule &mol) (defined in KCFFile) | KCFFile | [protected] |
| readLine() | LineBasedFile | |
| readNODE_(Molecule &mol, IndexAtomMap &index_to_atom) (defined in KCFFile) | KCFFile | [protected] |
| registerTransformation(const String &pattern, const String &exec) (defined in File) | File | [static] |
| remove(String name) | File | [static] |
| remove() | File | |
| rename(String old_path, String new_path) | File | [static] |
| renameTo(const String &new_path) | File | |
| reopen() | File | |
| reopen(File::OpenMode open_mode) | File | |
| rewind() | LineBasedFile | |
| search(const String &text, bool return_to_start=false) | LineBasedFile | |
| search(const String &text, const String &stop, bool return_to_start=false) (defined in LineBasedFile) | LineBasedFile | |
| setName(const String &name) | File | |
| skipLines(Size number=1) | LineBasedFile | |
| startsWith(const String &text) const | LineBasedFile | |
| switchString(const std::vector< String > &data) const | LineBasedFile | |
| test(const char *file, int line, bool condition, const String &msg) const | LineBasedFile | |
| Transformation enum name | File | |
| TRANSFORMATION__EXEC enum value (defined in File) | File | |
| TRANSFORMATION__FILTER enum value (defined in File) | File | |
| TRANSFORMATION__URL enum value (defined in File) | File | |
| TRANSFORMATION_EXEC_PREFIX | File | [static] |
| TRANSFORMATION_FILE_PREFIX | File | [static] |
| TRANSFORMATION_FTP_PREFIX | File | [static] |
| TRANSFORMATION_HTTP_PREFIX | File | [static] |
| transformation_manager_ (defined in File) | File | [protected, static] |
| transformation_methods_ (defined in File) | File | [protected, static] |
| trim_whitespaces_ (defined in LineBasedFile) | LineBasedFile | [protected] |
| trimWhiteSpacesEnabled() const (defined in LineBasedFile) | LineBasedFile | |
| truncate(String path, Size size=0) | File | [static] |
| truncate(Size size=0) | File | |
| Type enum name | File | |
| TYPE__BLOCK_SPECIAL_FILE enum value (defined in File) | File | |
| TYPE__CHAR_SPECIAL_FILE enum value (defined in File) | File | |
| TYPE__DIRECTORY enum value (defined in File) | File | |
| TYPE__FIFO_SPECIAL_FILE enum value (defined in File) | File | |
| TYPE__REGULAR_FILE enum value (defined in File) | File | |
| TYPE__SOCKET enum value (defined in File) | File | |
| TYPE__SYMBOLIC_LINK enum value (defined in File) | File | |
| TYPE__UNKNOWN enum value (defined in File) | File | |
| unregisterTransformation(const String &pattern) (defined in File) | File | [static] |
| write(const Molecule &molecule) | KCFFile | [virtual] |
| write(const System &system) | KCFFile | [virtual] |
| ~File() | File | [virtual] |
| ~GenericMolFile() | GenericMolFile | [virtual] |
| ~KCFFile() (defined in KCFFile) | KCFFile | [virtual] |