| all_aromatic_atoms_ (defined in Kekuliser) | Kekuliser | [protected] |
| applySolution_(Position pos) (defined in Kekuliser) | Kekuliser | [protected] |
| aromatic_atoms_ (defined in Kekuliser) | Kekuliser | [protected] |
| aromatic_rings_ (defined in Kekuliser) | Kekuliser | [protected] |
| aromatic_systems_ (defined in Kekuliser) | Kekuliser | [protected] |
| atom_infos_ (defined in Kekuliser) | Kekuliser | [protected] |
| calculateAromaticSystems_() (defined in Kekuliser) | Kekuliser | [protected] |
| calculateDistanceScores_() (defined in Kekuliser) | Kekuliser | [protected] |
| clear() (defined in Kekuliser) | Kekuliser | |
| collectAromaticAtoms_() (defined in Kekuliser) | Kekuliser | [protected] |
| collectSystems_(Atom &atom) (defined in Kekuliser) | Kekuliser | [protected] |
| current_aromatic_system_ (defined in Kekuliser) | Kekuliser | [protected] |
| current_penalty_ (defined in Kekuliser) | Kekuliser | [protected] |
| dump() (defined in Kekuliser) | Kekuliser | |
| fixAromaticRings_() (defined in Kekuliser) | Kekuliser | [protected] |
| fixAromaticSystem_(Position it) (defined in Kekuliser) | Kekuliser | [protected] |
| getMaximumValence_() (defined in Kekuliser) | Kekuliser | [protected] |
| getPenalty_(Atom &atom, Index charge) (defined in Kekuliser) | Kekuliser | [protected, virtual] |
| getUnassignedBonds() const (defined in Kekuliser) | Kekuliser | |
| hasAromaticBonds_(Atom &atom) (defined in Kekuliser) | Kekuliser | [protected] |
| Kekuliser() (defined in Kekuliser) | Kekuliser | |
| lowest_penalty_ (defined in Kekuliser) | Kekuliser | [protected] |
| max_valence_ (defined in Kekuliser) | Kekuliser | [protected] |
| molecule_ (defined in Kekuliser) | Kekuliser | [protected] |
| rings_ (defined in Kekuliser) | Kekuliser | [protected] |
| setAromaticRings(const std::vector< std::set< Atom * > > &rings) (defined in Kekuliser) | Kekuliser | |
| setRings(const std::vector< std::set< Atom * > > &rings) (defined in Kekuliser) | Kekuliser | |
| setup(Molecule &ac) (defined in Kekuliser) | Kekuliser | |
| setUseFormalCharges(bool state) (defined in Kekuliser) | Kekuliser | |
| solutions_ (defined in Kekuliser) | Kekuliser | [protected] |
| unassigned_bonds_ (defined in Kekuliser) | Kekuliser | [protected] |
| use_formal_charges_ (defined in Kekuliser) | Kekuliser | [protected] |
| useFormalCharges() const (defined in Kekuliser) | Kekuliser | |
| ~Kekuliser() (defined in Kekuliser) | Kekuliser | [virtual] |