, including all inherited members.
| addHydrogens() | VIEW::MolecularStructure | [slot] |
| addToolBarEntries(QToolBar *main_tb) | VIEW::ModularWidget | [virtual] |
| AMBER_FF enum value (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| applyPreferences() | VIEW::ModularWidget | [virtual] |
| buildBonds() | VIEW::MolecularStructure | [slot] |
| buildPeptide() | VIEW::MolecularStructure | [slot] |
| calculateFDPB(bool show=true) (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | [slot] |
| calculateForceFieldEnergy() | VIEW::MolecularStructure | [slot] |
| calculateHBonds() | VIEW::MolecularStructure | [slot] |
| calculateRamachandranPlot() | VIEW::MolecularStructure | [slot] |
| calculateRMSD() | VIEW::MolecularStructure | [virtual, slot] |
| calculateSecondaryStructure() | VIEW::MolecularStructure | [virtual, slot] |
| canHandle(const String &) const | VIEW::ModularWidget | [virtual] |
| centerCamera(Composite *composite=0) | VIEW::MolecularStructure | [slot] |
| CHARMM_FF enum value (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| checkMenu(MainControl &main_control) | VIEW::MolecularStructure | [virtual] |
| checkResidue() | VIEW::MolecularStructure | [virtual, slot] |
| chooseAmberFF() | VIEW::MolecularStructure | [slot] |
| chooseCharmmFF() | VIEW::MolecularStructure | [slot] |
| chooseForceField(Position nr) (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | [slot] |
| chooseMMFF94() | VIEW::MolecularStructure | [slot] |
| clear() | VIEW::ModularWidget | [virtual] |
| ConnectionObject() | VIEW::ConnectionObject | |
| countInstances_(const std::type_info &type) | Embeddable | [protected, static] |
| createGridFromCameraDistance() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | [virtual, slot] |
| createGridFromDistance() | VIEW::MolecularStructure | [virtual, slot] |
| default_visible_ (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [protected] |
| destroy() | VIEW::ModularWidget | [virtual] |
| dump(std::ostream &s=std::cout, Size depth=0) const | VIEW::ModularWidget | [virtual] |
| Embeddable(const String &identifier="<Embeddable>") | Embeddable | |
| Embeddable(const Embeddable &embeddable) | Embeddable | |
| EmbeddableVector typedef (defined in Embeddable) | Embeddable | |
| fetchPreferences(INIFile &inifile) | VIEW::MolecularStructure | [virtual] |
| finalizePreferencesTab(Preferences &preferences) | VIEW::ModularWidget | [virtual] |
| finalizeWidget(MainControl &main_control) | VIEW::ModularWidget | [virtual] |
| getAmberConfigurationDialog() | VIEW::MolecularStructure | |
| getAmberFF() | VIEW::MolecularStructure | |
| getCharmmConfigurationDialog() | VIEW::MolecularStructure | |
| getCharmmFF() | VIEW::MolecularStructure | |
| getFDPBDialog() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| getForceField() | VIEW::MolecularStructure | |
| getFragmentDB() const | VIEW::ModularWidget | |
| getIdentifier() const | Embeddable | |
| getInstance_(const std::type_info &type, Position index) | Embeddable | [protected, static] |
| getInstance_(const std::type_info &type, const String &identifier) | Embeddable | [protected, static] |
| getMainControl() const | VIEW::ModularWidget | |
| getMDSimulationDialog() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| getMinimizationDialog() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| getMMFF94() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| getMMFF94ConfigurationDialog() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| getParent() const | VIEW::ConnectionObject | |
| getRoot() | VIEW::ConnectionObject | |
| getWorkingDir() | VIEW::ModularWidget | |
| initializePreferencesTab(Preferences &preferences) | VIEW::ModularWidget | [virtual] |
| initializeWidget(MainControl &main_control) | VIEW::MolecularStructure | [virtual] |
| insertMenuEntry(Position parent_id, const String &name, const QObject *receiver=0, const char *slot=0, QKeySequence accel=QKeySequence()) (defined in VIEW::ModularWidget) | VIEW::ModularWidget | |
| isConnectionObjectRegistered(const ConnectionObject &object) | VIEW::ConnectionObject | |
| isValid() const | VIEW::ConnectionObject | [virtual] |
| last_action_ (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [protected] |
| lockComposites() | VIEW::ModularWidget | |
| main_toolbar_actions_ (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [protected] |
| mapProteins() | VIEW::MolecularStructure | [virtual, slot] |
| MDSimulation(bool show_dialog_=true) | VIEW::MolecularStructure | [slot] |
| MMFF94_FF enum value (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | |
| ModularWidget(const char *name="<ModularWidget>") | VIEW::ModularWidget | |
| ModularWidget(const ModularWidget &widget) | VIEW::ModularWidget | |
| MolecularStructure(QWidget *parent=0, const char *name=0) | VIEW::MolecularStructure | |
| MolecularStructure(const MolecularStructure &m) | VIEW::MolecularStructure | |
| notify_(Message *message) | VIEW::ConnectionObject | [protected] |
| notify_(Message &message) | VIEW::ConnectionObject | [protected] |
| onNotify(Message *message) | VIEW::MolecularStructure | [virtual] |
| onNotify_(Message *message) (defined in VIEW::ConnectionObject) | VIEW::ConnectionObject | [protected] |
| openFile(const String &) | VIEW::ModularWidget | [virtual] |
| registerConnectionObject(ConnectionObject &object) | VIEW::ConnectionObject | |
| registerForHelpSystem(const QObject *object, const String &url) | VIEW::ModularWidget | [virtual] |
| registerInstance_(const std::type_info &type, const Embeddable *instance) (defined in Embeddable) | Embeddable | [protected, static] |
| registerThis() | Embeddable | [virtual] |
| registerWidget(ModularWidget *mwidget) | VIEW::ModularWidget | [static] |
| runMinimization(bool show_dialog_=true) | VIEW::MolecularStructure | [slot] |
| setIcon(const String &filename, bool add_to_main_toolbar=true) | VIEW::ModularWidget | |
| setIdentifier(const String &identifier) | Embeddable | |
| setMenuHelp(const String &url) | VIEW::ModularWidget | |
| setMenuHint(const String &hint) | VIEW::ModularWidget | |
| setStatusbarText(String text, bool important=false) | VIEW::ModularWidget | [virtual] |
| setupForceField() | VIEW::MolecularStructure | [slot] |
| setWorkingDir(const String &dir) | VIEW::ModularWidget | |
| setWorkingDirFromFilename_(String filename) (defined in VIEW::ModularWidget) | VIEW::ModularWidget | |
| show_window_enty_ (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [protected] |
| showAmberForceFieldOptions() | VIEW::MolecularStructure | [slot] |
| showCharmmForceFieldOptions() | VIEW::MolecularStructure | [slot] |
| showHelp(const String &url) (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [virtual] |
| showMMFF94ForceFieldOptions() (defined in VIEW::MolecularStructure) | VIEW::MolecularStructure | [slot] |
| unlockComposites() | VIEW::ModularWidget | |
| unregisterConnectionObject(ConnectionObject &object) | VIEW::ConnectionObject | |
| unregisterInstance_(const Embeddable *instance) (defined in Embeddable) | Embeddable | [protected, static] |
| unregisterThis() | Embeddable | |
| window_menu_entry_ (defined in VIEW::ModularWidget) | VIEW::ModularWidget | [protected] |
| writePreferences(INIFile &inifile) | VIEW::MolecularStructure | [virtual] |
| ~ConnectionObject() | VIEW::ConnectionObject | [virtual] |
| ~Embeddable() (defined in Embeddable) | Embeddable | [virtual] |
| ~ModularWidget() | VIEW::ModularWidget | [virtual] |
| ~MolecularStructure() | VIEW::MolecularStructure | [virtual] |