, including all inherited members.
| addLambda(Matrix< double > &matrix, double &lambda) | BALL::QSAR::Model | [protected] |
| backTransformPrediction(Vector< double > &pred) | BALL::QSAR::Model | [protected] |
| calculateStdErr() | BALL::QSAR::Model | [inline, virtual] |
| ClassificationModel(const QSARData &q) | BALL::QSAR::ClassificationModel | |
| ClassificationValidation class | BALL::QSAR::ClassificationModel | [friend] |
| copyData(const Model &m) | BALL::QSAR::Model | |
| copyDescriptorIDs(const Model &m) | BALL::QSAR::Model | |
| data | BALL::QSAR::Model | |
| default_no_opt_steps_ | BALL::QSAR::Model | [protected] |
| deleteDescriptorIDs() | BALL::QSAR::Model | |
| descriptor_IDs_ | BALL::QSAR::Model | [protected] |
| descriptor_matrix_ | BALL::QSAR::Model | [protected] |
| descriptor_names_ | BALL::QSAR::Model | [protected] |
| descriptor_transformations_ | BALL::QSAR::Model | [protected] |
| discretizeFeatures | BALL::QSAR::ClassificationModel | [protected] |
| discretizeTestDataFeatures | BALL::QSAR::ClassificationModel | [protected] |
| equalSpaceDiscretization(uint bins, BALL::Matrix< double > &discretization_information) | BALL::QSAR::ClassificationModel | [protected] |
| equalSpaceDiscretizationTestData(Vector< double > &compound, uint bins, const BALL::Matrix< double > &discretization_information) | BALL::QSAR::ClassificationModel | [protected] |
| getClassLabels() | BALL::QSAR::ClassificationModel | |
| getDescriptorIDs() | BALL::QSAR::Model | |
| getDescriptorMatrix() | BALL::QSAR::Model | |
| getDescriptorNames() | BALL::QSAR::Model | |
| getParameters() const | BALL::QSAR::LDAModel | [virtual] |
| getSubstanceNames() | BALL::QSAR::Model | |
| getSubstanceVector(const vector< double > &substance, bool transform) | BALL::QSAR::Model | [protected] |
| getSubstanceVector(const Vector< double > &substance, bool transform) | BALL::QSAR::Model | [protected] |
| getType() | BALL::QSAR::Model | |
| getUnnormalizedFeatureValue(int compound, int feature, double &return_value) | BALL::QSAR::Model | |
| getUnnormalizedResponseValue(int compound, int response, double &return_value) | BALL::QSAR::Model | |
| getY() | BALL::QSAR::Model | |
| labels_ | BALL::QSAR::ClassificationModel | [protected] |
| lambda_ | BALL::QSAR::LDAModel | [private] |
| LDAModel(const QSARData &q) | BALL::QSAR::LDAModel | |
| mean_vectors_ | BALL::QSAR::LDAModel | [private] |
| Model(const QSARData &q) | BALL::QSAR::Model | |
| model_val | BALL::QSAR::Model | |
| no_substances_ | BALL::QSAR::ClassificationModel | [protected] |
| operator=(ClassificationModel &m) | BALL::QSAR::ClassificationModel | [virtual] |
| BALL::QSAR::Model::operator=(const Model &m) | BALL::QSAR::Model | [virtual] |
| optimizeParameters(int, int) | BALL::QSAR::Model | [inline, virtual] |
| optimizeParameters(int k) | BALL::QSAR::Model | |
| predict(const vector< double > &substance, bool transform=1) | BALL::QSAR::LDAModel | [virtual] |
| readClassInformationFromFile(std::ifstream &input, int no_classes) | BALL::QSAR::ClassificationModel | [protected] |
| readDescriptorInformation() | BALL::QSAR::Model | [protected] |
| readDescriptorInformationFromFile(std::ifstream &in, int no_descriptors, bool transformation) | BALL::QSAR::Model | [protected, virtual] |
| readFromFile(string filename) | BALL::QSAR::LDAModel | [virtual] |
| readLabels() | BALL::QSAR::ClassificationModel | [protected] |
| readMatrix(Matrix< double > &mat, std::ifstream &in, uint lines, uint col) | BALL::QSAR::Model | [protected] |
| readModelParametersFromFile(std::ifstream &in) | BALL::QSAR::Model | [protected] |
| readResponseTransformationFromFile(std::ifstream &in, int no_y) | BALL::QSAR::Model | [protected] |
| readTrainingData() | BALL::QSAR::Model | |
| readVector(Vector< double > &vec, std::ifstream &in, uint no_cells, bool column_vector) | BALL::QSAR::Model | [protected] |
| RegressionValidation class | BALL::QSAR::Model | [friend] |
| saveClassInformationToFile(std::ofstream &out) | BALL::QSAR::ClassificationModel | [protected] |
| saveDescriptorInformationToFile(std::ofstream &out) | BALL::QSAR::Model | [protected, virtual] |
| saveModelParametersToFile(std::ofstream &out) | BALL::QSAR::Model | [protected] |
| saveResponseTransformationToFile(std::ofstream &out) | BALL::QSAR::Model | [protected] |
| saveToFile(string filename) | BALL::QSAR::LDAModel | [virtual] |
| setDataSource(const QSARData *q) | BALL::QSAR::Model | |
| setDescriptorIDs(const std::multiset< unsigned int > &sl) | BALL::QSAR::Model | |
| setParameters(vector< double > &v) | BALL::QSAR::LDAModel | [virtual] |
| sigma_ | BALL::QSAR::LDAModel | [private] |
| substance_names_ | BALL::QSAR::Model | [protected] |
| train() | BALL::QSAR::LDAModel | [virtual] |
| type_ | BALL::QSAR::Model | [protected] |
| Validation class | BALL::QSAR::Model | [friend] |
| validation | BALL::QSAR::ClassificationModel | |
| Y_ | BALL::QSAR::Model | [protected] |
| y_transformations_ | BALL::QSAR::Model | [protected] |
| ~ClassificationModel() | BALL::QSAR::ClassificationModel | |
| ~LDAModel() | BALL::QSAR::LDAModel | |
| ~Model() | BALL::QSAR::Model | [virtual] |
1.6.3
