BALL::VIEW::MolecularFileDialog Class Reference
[QT Dialogs]

#include <BALL/VIEW/DIALOGS/molecularFileDialog.h>

Inheritance diagram for BALL::VIEW::MolecularFileDialog:

Public Slots
virtual void	readFiles ()
virtual bool	writeFile ()
Public Member Functions
	MolecularFileDialog (QWidget parent=0, const char name="MolecularFileDialog")
virtual	~MolecularFileDialog ()
	Destructor.
virtual void	initializeWidget (MainControl &main_control)
virtual bool	canHandle (const String &fileformat) const
virtual bool	openFile (const String &filename)
virtual System *	openMolecularFile (const String &file)
virtual System *	openMolecularFile (const String &filename, const String &filetype, const String &system_name)
System *	openPDBFile ()
System *	openHINFile ()
System *	openMOLFile ()
System *	openMOL2File ()
System *	openSDFile ()
System *	openACFile ()
System *	openXYZFile ()
System *	readPDBFile (String filename, String system_name)
System *	readHINFile (String filename, String system_name)
System *	readMOLFile (String filename, String system_name)
System *	readMOL2File (String filename, String system_name)
System *	readSDFile (String filename, String system_name)
System *	readACFile (String filename, String system_name)
System *	readXYZFile (String filename, String system_name)
bool	writePDBFile (String filename, const System &system)
bool	writeHINFile (String filename, const System &system)
bool	writeMOLFile (String filename, const System &system)
bool	writeMOL2File (String filename, const System &system)
bool	writeSDFile (String filename, const System &system)
bool	writeACFile (String filename, const System &system)
bool	writeXYZFile (String filename, const System &system)
virtual void	checkMenu (MainControl &main_control)
	Overloaded from ModularWidget.
virtual String	getSupportedFileFormats () const
virtual String	getSupportedFileFormatsList () const
void	setReadPDBModels (bool read)
Protected Types
enum	FileFormats { PDB_FILE = 0, HIN_FILE, MOL_FILE, MOL2_FILE, SD_FILE, XYZ_FILE }
Protected Member Functions
virtual void	onNotify (Message *message)
	MolecularFileDialog (const MolecularFileDialog &mfd)
virtual bool	finish_ (const String &filename, const String &system_name, System *system)
System *	openFile_ (String type)
Protected Attributes
QAction *	save_id_
QAction *	open_id_
String	file_format_
bool	read_all_pdb_models_

Detailed Description

Dialog for opening molecular data files. This class is used to read or write Molecular files in one of several file formats. Currently supported file formats are:

: HIN, MOL, MOL2, PDB, SD, XYZ

: Upon reading a file, the information will be stored in a System. This class can also take a System and write it in one of the supported file formats. This class is derived from ModularWidget.

See also:: HINFile; MOLFile; MOL2File; PDBFile; SDFile; XYZFile

Definition at line 45 of file molecularFileDialog.h.

Member Enumeration Documentation

enum BALL::VIEW::MolecularFileDialog::FileFormats [protected]

Enumerator:

PDB_FILE
HIN_FILE
MOL_FILE
MOL2_FILE
SD_FILE
XYZ_FILE

Definition at line 215 of file molecularFileDialog.h.

Constructor & Destructor Documentation

BALL::VIEW::MolecularFileDialog::MolecularFileDialog	(	QWidget *	parent = `0`,
		const char *	name = `"MolecularFileDialog"`
	)

Default Constructor. Calls ModularWidget::registerWidget()

virtual BALL::VIEW::MolecularFileDialog::~MolecularFileDialog ( ) [virtual]

Destructor.

BALL::VIEW::MolecularFileDialog::MolecularFileDialog ( const MolecularFileDialog & mfd ) [protected]

Member Function Documentation

virtual bool BALL::VIEW::MolecularFileDialog::canHandle ( const String & fileformat ) const [virtual]

Test if this ModularWidget can handle a given file format. (Overloaded from ModularWidget)

Parameters:

fileform

short string with the file extension (e.g. PDB)

See also:: openFile

Reimplemented from BALL::VIEW::ModularWidget.

virtual void BALL::VIEW::MolecularFileDialog::checkMenu ( MainControl & main_control ) [virtual]

Overloaded from ModularWidget.

Reimplemented from BALL::VIEW::ModularWidget.

virtual bool BALL::VIEW::MolecularFileDialog::finish_	(	const String &	filename,
		const String &	system_name,
		System *	system
	)			`[protected, virtual]`

virtual String BALL::VIEW::MolecularFileDialog::getSupportedFileFormats ( ) const [virtual]

virtual String BALL::VIEW::MolecularFileDialog::getSupportedFileFormatsList ( ) const [virtual]

virtual void BALL::VIEW::MolecularFileDialog::initializeWidget ( MainControl & main_control ) [virtual]

Initializes the menu entries in File. This method is called automatically immediately before the main application is started. This method will be called MainControl::show().

Parameters:

main_control

the MainControl object to be initialized

See also:: finalizeWidget

Reimplemented from BALL::VIEW::ModularWidget.

virtual void BALL::VIEW::MolecularFileDialog::onNotify ( Message * message ) [protected, virtual]

Message handling method. This method handles messages sent to this connectionObject. If a certain message should be processed for this connectionObject this method must be overridden. With the help of the RTTI methods one can easily determine if an incoming message is relevant for this connectionObject. See Message for further information concerning messages.

Parameters:

message

a pointer to a message. Do not delete the message in this method.

Reimplemented from BALL::VIEW::ConnectionObject.

System* BALL::VIEW::MolecularFileDialog::openACFile ( )

virtual bool BALL::VIEW::MolecularFileDialog::openFile ( const String & filename ) [virtual]

Tell this ModularWidget to open a given file. (Overloaded from ModularWidget)

See also:: canHandle

Reimplemented from BALL::VIEW::ModularWidget.

System* BALL::VIEW::MolecularFileDialog::openFile_ ( String type ) [protected]

System* BALL::VIEW::MolecularFileDialog::openHINFile ( )

System* BALL::VIEW::MolecularFileDialog::openMOL2File ( )

virtual System* BALL::VIEW::MolecularFileDialog::openMolecularFile	(	const String &	filename,
		const String &	filetype,
		const String &	system_name
	)			`[virtual]`

Wrapper for the read methods. The filetype String is used to indentify the file type (HIN, PDP, MOL, MOL2). It is possible to give the system a designated name, otherwise it is named by the file.

virtual System* BALL::VIEW::MolecularFileDialog::openMolecularFile ( const String & file ) [virtual]

Open a given molecular file. The file type is identified by the filename extension. This method can be used to load molecular files, which were given as command line arguments.

System* BALL::VIEW::MolecularFileDialog::openMOLFile ( )

System* BALL::VIEW::MolecularFileDialog::openPDBFile ( )

System* BALL::VIEW::MolecularFileDialog::openSDFile ( )

System* BALL::VIEW::MolecularFileDialog::openXYZFile ( )

System* BALL::VIEW::MolecularFileDialog::readACFile	(	String	filename,
		String	system_name
	)

Read an AC file

virtual void BALL::VIEW::MolecularFileDialog::readFiles ( ) [virtual, slot]

Open a molecular file. This method tries to open and read a molecular file, selected from a QFileDialog, and, if susccesfull, converts is into a System. Then it sends a CompositeMessage containing the System to the other ConnectionObject instances.

See also:: CompositeMessage; ConnectionObject

System* BALL::VIEW::MolecularFileDialog::readHINFile	(	String	filename,
		String	system_name
	)

Read a HIN file

System* BALL::VIEW::MolecularFileDialog::readMOL2File	(	String	filename,
		String	system_name
	)

Read a MOL2 file

System* BALL::VIEW::MolecularFileDialog::readMOLFile	(	String	filename,
		String	system_name
	)

Read a MOL file

System* BALL::VIEW::MolecularFileDialog::readPDBFile	(	String	filename,
		String	system_name
	)

Read a PDB file

System* BALL::VIEW::MolecularFileDialog::readSDFile	(	String	filename,
		String	system_name
	)

Read a SD file

System* BALL::VIEW::MolecularFileDialog::readXYZFile	(	String	filename,
		String	system_name
	)

Read a XYZ file

void BALL::VIEW::MolecularFileDialog::setReadPDBModels ( bool read ) [inline]

Definition at line 184 of file molecularFileDialog.h.

bool BALL::VIEW::MolecularFileDialog::writeACFile	(	String	filename,
		const System &	system
	)

Write an AC file

virtual bool BALL::VIEW::MolecularFileDialog::writeFile ( ) [virtual, slot]

Write a molecular file. This method takes a System and saves it into a molecular file, selected from a QFileDialog.

bool BALL::VIEW::MolecularFileDialog::writeHINFile	(	String	filename,
		const System &	system
	)

Write a HIN file

bool BALL::VIEW::MolecularFileDialog::writeMOL2File	(	String	filename,
		const System &	system
	)

Write a MOL2 file

bool BALL::VIEW::MolecularFileDialog::writeMOLFile	(	String	filename,
		const System &	system
	)

Write a MOL file

bool BALL::VIEW::MolecularFileDialog::writePDBFile	(	String	filename,
		const System &	system
	)

Write a PDB file

bool BALL::VIEW::MolecularFileDialog::writeSDFile	(	String	filename,
		const System &	system
	)

Write a SD file

bool BALL::VIEW::MolecularFileDialog::writeXYZFile	(	String	filename,
		const System &	system
	)

Write a XYZ file

Member Data Documentation

String BALL::VIEW::MolecularFileDialog::file_format_ [protected]

Definition at line 226 of file molecularFileDialog.h.

QAction * BALL::VIEW::MolecularFileDialog::open_id_ [protected]

Definition at line 225 of file molecularFileDialog.h.

bool BALL::VIEW::MolecularFileDialog::read_all_pdb_models_ [protected]

Definition at line 227 of file molecularFileDialog.h.

QAction* BALL::VIEW::MolecularFileDialog::save_id_ [protected]

Definition at line 225 of file molecularFileDialog.h.

BALL::VIEW::MolecularFileDialog Class Reference [QT Dialogs]

Public Slots

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

BALL::VIEW::MolecularFileDialog Class Reference
[QT Dialogs]