BALL  1.4.2
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BALL::FragmentDB Member List

This is the complete list of members for BALL::FragmentDB, including all inherited members.

add_hydrogensBALL::FragmentDB
addNewFragment_(Residue *fragment)BALL::FragmentDBprivate
build_bondsBALL::FragmentDB
default_standard_BALL::FragmentDBprivate
destroy()BALL::FragmentDB
expandFirst_(ResourceEntry &root_entry)BALL::FragmentDBprivate
expandTree_(ResourceEntry &root_entry)BALL::FragmentDBprivate
filename_BALL::FragmentDBprivate
FragmentDB()BALL::FragmentDB
FragmentDB(const String &filename)BALL::FragmentDB
FragmentDB(const FragmentDB &db, bool deep=true)BALL::FragmentDB
FragmentDB::AddHydrogensProcessor classBALL::FragmentDBfriend
fragments_BALL::FragmentDBprivate
FragmentTypes enum nameBALL::FragmentDB
getAvailableNamingStandards() const BALL::FragmentDB
getDefaultNamingStandard() const BALL::FragmentDB
getFilename() const BALL::FragmentDB
getFragment(const String &fragment_name) const BALL::FragmentDB
getFragmentCopy(const String &fragment_name) const BALL::FragmentDB
getFragments() const BALL::FragmentDBinline
getFragmentType(const String &fragment_name) const BALL::FragmentDB
getMoleculeCopy(const String &fragment_name) const BALL::FragmentDB
getNamingStandard(const String &std) const BALL::FragmentDB
getNamingStandards()BALL::FragmentDB
getReferenceFragment(const Fragment &fragment) const BALL::FragmentDB
getResidue(const String &fragment_name) const BALL::FragmentDB
getResidueCopy(const String &fragment_name) const BALL::FragmentDB
getVariantNames(const String &name) const BALL::FragmentDB
has(const String &fragment_name) const BALL::FragmentDB
init()BALL::FragmentDB
isValid() const BALL::FragmentDB
name_to_frag_index_BALL::FragmentDBprivate
name_to_path_BALL::FragmentDBprivate
name_to_variants_BALL::FragmentDBprivate
NameMap typedefBALL::FragmentDB
normalize_namesBALL::FragmentDB
operator=(const FragmentDB &db)BALL::FragmentDB
parseAtoms_(ResourceEntry &entry, Fragment &fragment)BALL::FragmentDBprivate
parseBonds_(ResourceEntry &entry, Fragment &fragment)BALL::FragmentDBprivate
parseDelete_(ResourceEntry &entry, Fragment &fragment)BALL::FragmentDBprivate
parseProperties_(ResourceEntry &entry, PropertyManager &property_man)BALL::FragmentDBprivate
parseRename_(ResourceEntry &entry, Fragment &fragment)BALL::FragmentDBprivate
setFilename(const String &filename)BALL::FragmentDB
standards_BALL::FragmentDBprivate
treeBALL::FragmentDB
Type typedefBALL::FragmentDB
TYPE__FRAGMENT enum valueBALL::FragmentDB
TYPE__MOLECULE enum valueBALL::FragmentDB
TYPE__RESIDUE enum valueBALL::FragmentDB
TYPE__UNKNOWN enum valueBALL::FragmentDB
valid_BALL::FragmentDBprivate
~FragmentDB()BALL::FragmentDBvirtual
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