BALL::CanonicalMD Member List

This is the complete list of members for BALL::CanonicalMD, including all inherited members.

abort_by_energy_enabled_	BALL::MolecularDynamics	protected
abort_energy_	BALL::MolecularDynamics	protected
atom_vector_	BALL::MolecularDynamics	protected
bath_relaxation_time_	BALL::CanonicalMD	protected
calculateFactors_()	BALL::CanonicalMD	protected
CanonicalMD()	BALL::CanonicalMD
CanonicalMD(ForceField &myforcefield)	BALL::CanonicalMD
CanonicalMD(ForceField &force_field, SnapShotManager *ssm)	BALL::CanonicalMD
CanonicalMD(ForceField &myforcefield, SnapShotManager *ssm, const Options &options)	BALL::CanonicalMD
CanonicalMD(const CanonicalMD &rhs)	BALL::CanonicalMD
current_temperature_	BALL::MolecularDynamics	protected
current_time_	BALL::MolecularDynamics	protected
enableEnergyAbortCondition(bool state)	BALL::MolecularDynamics
energy_output_frequency_	BALL::MolecularDynamics	protected
energyAbortConditionEnabled() const	BALL::MolecularDynamics
force_field_ptr_	BALL::MolecularDynamics	protected
getBathRelaxationTime() const	BALL::CanonicalMD
getEnergyOutputFrequency() const	BALL::MolecularDynamics
getEnergyToAbort() const	BALL::MolecularDynamics
getForceField() const	BALL::MolecularDynamics
getKineticEnergy() const	BALL::MolecularDynamics
getMaximalNumberOfIterations() const	BALL::MolecularDynamics
getMaximalSimulationTime() const	BALL::MolecularDynamics
getNumberOfIterations() const	BALL::MolecularDynamics
getPotentialEnergy() const	BALL::MolecularDynamics
getSnapShotFrequency() const	BALL::MolecularDynamics
getTemperature() const	BALL::MolecularDynamics
getTime() const	BALL::MolecularDynamics
getTimeStep() const	BALL::MolecularDynamics
getTotalEnergy() const	BALL::MolecularDynamics
isValid() const	BALL::MolecularDynamics
kinetic_energy_	BALL::MolecularDynamics	protected
mass_factor_	BALL::CanonicalMD	protected
maximal_number_of_iterations_	BALL::MolecularDynamics	protected
MolecularDynamics()	BALL::MolecularDynamics
MolecularDynamics(ForceField &force_field)	BALL::MolecularDynamics
MolecularDynamics(const MolecularDynamics &rhs)	BALL::MolecularDynamics
number_of_iteration_	BALL::MolecularDynamics	protected
operator=(const CanonicalMD &rhs)	BALL::CanonicalMD
BALL::MolecularDynamics::operator=(const MolecularDynamics &rhs)	BALL::MolecularDynamics
options	BALL::MolecularDynamics
reference_temperature_	BALL::MolecularDynamics	protected
set(const MolecularDynamics &rhs)	BALL::MolecularDynamics
setBathRelaxationTime(double time)	BALL::CanonicalMD
setCurrentTime(double time)	BALL::MolecularDynamics
setEnergyOutputFrequency(Size number)	BALL::MolecularDynamics
setEnergyToAbort(float value)	BALL::MolecularDynamics
setMaximalNumberOfIterations(Size number)	BALL::MolecularDynamics
setMaximalSimulationTime(double time)	BALL::MolecularDynamics
setNumberOfIteration(Size number)	BALL::MolecularDynamics
setReferenceTemperature(double temperature)	BALL::MolecularDynamics
setSnapShotFrequency(Size number)	BALL::MolecularDynamics
setTimeStep(double time)	BALL::CanonicalMD	virtual
setup(ForceField &force_field, SnapShotManager *ssm=0)	BALL::CanonicalMD	virtual
setup(ForceField &force_field, SnapShotManager *ssm, const Options &options)	BALL::CanonicalMD	virtual
simulate(bool restart=false)	BALL::MolecularDynamics
simulateIterations(Size number, bool restart=false)	BALL::CanonicalMD	virtual
simulateTime(double simulation_time, bool restart=false)	BALL::MolecularDynamics
snapshot_frequency_	BALL::MolecularDynamics	protected
snapshot_manager_ptr_	BALL::MolecularDynamics	protected
specificSetup()	BALL::CanonicalMD	virtual
system_ptr_	BALL::MolecularDynamics	protected
time_step_	BALL::MolecularDynamics	protected
total_energy_	BALL::MolecularDynamics	protected
updateInstantaneousTemperature()	BALL::MolecularDynamics	protected
valid_	BALL::MolecularDynamics	protected
~CanonicalMD()	BALL::CanonicalMD	virtual
~MolecularDynamics()	BALL::MolecularDynamics	virtual