FragmentDB::NormalizeNamesProcessor Class Reference

Name normalization processor. More...

#include <fragmentDB.h>

Inheritance diagram for FragmentDB::NormalizeNamesProcessor:

List of all members.

Public Member Functions
Constructors and Destructors
	NormalizeNamesProcessor ()
	Default constructor.
	NormalizeNamesProcessor (FragmentDB &db)
	Constructor.
virtual	~NormalizeNamesProcessor ()
	Destructor.
Inspectors and Mutators
void	setFragmentDB (FragmentDB &db)
	Bind the processor to a fragment database.
void	setNamingStandard (const String &naming_standard)
const String &	getNamingStandard ()
	Retrieve the current naming standard.
bool	matchName (String &res_name, String &atom_name, const NameMap &map) const
	Try to match a name in one of the maps.
Processor specific methods
virtual bool	start ()
	Start method.
virtual bool	finish ()
	Finish method.
virtual Processor::Result	operator() (Fragment &fragment)
	Application method.

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Detailed Description

Name normalization processor.

This class is used to adopt all names in a molecular system to a given naming standard (usually the PDB standard).

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Member Function Documentation

void FragmentDB::NormalizeNamesProcessor::setFragmentDB (  FragmentDB &  db  )

Bind the processor to a fragment database.