BALL::VIEW::AtomBondModelBaseProcessor Class Reference
[Model Processors]

#include <BALL/VIEW/MODELS/atomBondModelBaseProcessor.h>

Inheritance diagram for BALL::VIEW::AtomBondModelBaseProcessor:


Public Member Functions
Constructors and Destructors
	AtomBondModelBaseProcessor ()
	AtomBondModelBaseProcessor (const AtomBondModelBaseProcessor &baseProcessor)
virtual	~AtomBondModelBaseProcessor ()
virtual void	clear ()
Assignment
void	set (const AtomBondModelBaseProcessor &processor)
const AtomBondModelBaseProcessor &	operator= (const AtomBondModelBaseProcessor &processor)
Processor specific methods
virtual Processor::Result	operator() (Composite &composite)
debuggers and diagnostics
virtual void	dump (std::ostream &s=std::cout, Size depth=0) const
virtual void	clearComposites ()
virtual bool	createGeometricObjects ()
Protected Member Functions
virtual void	visualiseBond_ (const Bond &bond)
virtual void	visualiseRings_ ()
Protected members
This methods are provided for easy generation of models. With the method insertAtom_() all Atom objects that will be part of the newly created model will be stored. This stored atoms are later used (in the method buildBondModels_()) to create the models of the Bond objects that can be reached from the atoms. The other methods are access method for the stored atoms.
void	insertAtom_ (const Atom *atom)
void	clearUsedAtoms_ ()
List< const Atom * > &	getAtomList_ ()
HashSet< const Atom * > &	getAtomSet_ ()
void	buildBondModels_ ()
Protected Attributes
vector< vector< Atom * > >	rings_
HashSet< const Atom * >	ring_atoms_
Private Attributes
List< const Atom * >	used_atoms_
HashSet< const Atom * >	atom_set_

Detailed Description

AtomBondModelBaseProcessor class. The class AtomBondModelBaseProcessor is the base class for all models whose structure is somewhat orientated after the Atom and Bond structure (e.g. the model Ball And Stick)

Constructor & Destructor Documentation

BALL::VIEW::AtomBondModelBaseProcessor::AtomBondModelBaseProcessor ( )

Default Constructor. Clear all used Atom objects.

BALL::VIEW::AtomBondModelBaseProcessor::AtomBondModelBaseProcessor ( const AtomBondModelBaseProcessor & baseProcessor )

Copy constructor.

virtual BALL::VIEW::AtomBondModelBaseProcessor::~AtomBondModelBaseProcessor ( ) [virtual]

Destructor.

Member Function Documentation

void BALL::VIEW::AtomBondModelBaseProcessor::buildBondModels_ ( ) [protected]

Build the bond models. This method is called from the finish method. It iterates over every Bond object that can be reached from the stored Atom objects and calls visualiseBond_(), which has to be overloaded in derived classes.

virtual void BALL::VIEW::AtomBondModelBaseProcessor::clear ( ) [virtual]

Explicit default initialization. Reset the state of this AtomBondModelBaseProcessor:

clear the used atoms
clear the ModelProcessor Calls ModelProcessor::clear. Calls clearUsedAtoms_().

Reimplemented from BALL::VIEW::ModelProcessor.

Reimplemented in BALL::VIEW::AddBallAndStickModel, and BALL::VIEW::HBondModelProcessor.

virtual void BALL::VIEW::AtomBondModelBaseProcessor::clearComposites ( ) [virtual]

Needed in derived classes, which store references to the Composite instances they worked on. Here only needed for a common interface and therefore empty.

Reimplemented from BALL::VIEW::ModelProcessor.

void BALL::VIEW::AtomBondModelBaseProcessor::clearUsedAtoms_ ( ) [protected]

Clear all used atoms.

virtual bool BALL::VIEW::AtomBondModelBaseProcessor::createGeometricObjects ( ) [virtual]

Method to create geometric objects. This method is called in Representation::update() after all operator() was called for all Composites. To be overloaded in derived classes

Reimplemented from BALL::VIEW::ModelProcessor.

Reimplemented in BALL::VIEW::AddBallAndStickModel.

virtual void BALL::VIEW::AtomBondModelBaseProcessor::dump	(	std::ostream &	s = `std::cout`,
		Size	depth = `0`
	)			const `[virtual]`

Internal value dump. Dump the current state to the output ostream s with dumping depth depth. Calls ModelProcessor::dump.

Parameters:

	s	output stream where to output the state
	depth	the dumping depth

Reimplemented from BALL::VIEW::ModelProcessor.

Reimplemented in BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddLineModel, and BALL::VIEW::AddVanDerWaalsModel.

List<const Atom*>& BALL::VIEW::AtomBondModelBaseProcessor::getAtomList_ ( ) [protected]

Mutable inspection of the list of used atoms.

HashSet<const Atom*>& BALL::VIEW::AtomBondModelBaseProcessor::getAtomSet_ ( ) [protected]

Mutable inspection of the hash set of used atoms.

void BALL::VIEW::AtomBondModelBaseProcessor::insertAtom_ ( const Atom * atom ) [protected]

Insert an Atom into the used atoms structure. All the inserted atoms will be later processed to generate the graphical representation of the Bond objects that can be reached from each inserted atom.

Parameters:

atom

the Atom object to inserted

virtual Processor::Result BALL::VIEW::AtomBondModelBaseProcessor::operator() ( Composite & composite ) [virtual]

Operator method. This method iterates over each Composite object reachable in the Composite tree. If a Composite is of kind Moleculue and has aromatic rings, these rings are stored for later processing in the finish method.

Parameters:

composite

the Composite object that will be processed

Reimplemented from BALL::UnaryProcessor< Composite >.

Reimplemented in BALL::VIEW::AddBallAndStickModel, BALL::VIEW::HBondModelProcessor, BALL::VIEW::AddLineModel, and BALL::VIEW::AddVanDerWaalsModel.

const AtomBondModelBaseProcessor& BALL::VIEW::AtomBondModelBaseProcessor::operator= ( const AtomBondModelBaseProcessor & processor )

Assignment operator. Calls set.

void BALL::VIEW::AtomBondModelBaseProcessor::set ( const AtomBondModelBaseProcessor & processor )

Assignment. Calls clearUsedAtoms_(). Calls ModelProcessor::set.

virtual void BALL::VIEW::AtomBondModelBaseProcessor::visualiseBond_ ( const Bond & bond ) [protected, virtual]

Reimplemented in BALL::VIEW::AddBallAndStickModel, and BALL::VIEW::AddLineModel.

virtual void BALL::VIEW::AtomBondModelBaseProcessor::visualiseRings_ ( ) [inline, protected, virtual]