Classes | |
| class | AminoAcidDescriptor |
| class | PeptideBuilder |
Typedefs | |
Type definitions | |
| typedef std::list< String > | ThreeLetterAASequence |
An amino acid sequence in three-letter code. | |
| typedef String | OneLetterAASequence |
An amino acid sequence in one-letter code. | |
Functions | |
Amino acid sequence conversion | |
| BALL_EXPORT char | OneLetterCode (const String &aa) |
| BALL_EXPORT String | ThreeLetterCode (char aa) |
| BALL_EXPORT OneLetterAASequence | ThreeLetterToOneLetter (const ThreeLetterAASequence &sequence) |
| BALL_EXPORT ThreeLetterAASequence | OneLetterToThreeLetter (const OneLetterAASequence &sequence) |
| BALL_EXPORT OneLetterAASequence | GetSequence (const Protein &protein) |
An amino acid sequence in one-letter code.
| typedef std::list<String> BALL::Peptides::ThreeLetterAASequence |
An amino acid sequence in three-letter code.
| BALL_EXPORT OneLetterAASequence BALL::Peptides::GetSequence | ( | const Protein & | protein | ) |
Get amino acid sequence from an protein. This method iterates over all residues of the protein, calls OneLetterCode for each of the residue names, and returns the concatenation of all results.
| BALL_EXPORT char BALL::Peptides::OneLetterCode | ( | const String & | aa | ) |
Convert a three-letter amino acid name to the one-letter abbreviation. If the string given is not the three-letter code of one of the twenty amino acids, '?' is returned. This method is not case sensitive.
| BALL_EXPORT ThreeLetterAASequence BALL::Peptides::OneLetterToThreeLetter | ( | const OneLetterAASequence & | sequence | ) |
Convert an amino acid sequence from one-letter code to three-letter code. Call ThreeLetterCode for each of the characters in the string.
| BALL_EXPORT String BALL::Peptides::ThreeLetterCode | ( | char | aa | ) |
Convert a one-letter amino acid abbreviation to its three-letter code. If the character given is not the code for one of the twenty amino acids, 'UNK' is returned. This method is not case sensitive. The strings returned are all upper cases.
| BALL_EXPORT OneLetterAASequence BALL::Peptides::ThreeLetterToOneLetter | ( | const ThreeLetterAASequence & | sequence | ) |
Convert an amino acid sequence from three-letter code to one-letter code. Call OneLetterCode for each of the amino acids in the sequence.