, including all inherited members.
| addMonomericPolymer(MonomericPolymer mp) | BALL::NMRStarFile | |
| assignShifts(BALLToBMRBMapper &ball_to_bmrb_mapping) | BALL::NMRStarFile | |
| assignShifts(AtomContainer &ac, const String &aligned_ball_sequence, const String &aligned_nmrstar_sequence) | BALL::NMRStarFile | |
| assignShifts_(BALLToBMRBMapper &pdb_to_bmrb_mapping) | BALL::NMRStarFile | [private] |
| atom_data_sets_ | BALL::NMRStarFile | [private] |
| ATOM_GROUP enum value | BALL::NMRStarFile | [private] |
| ATOM_TYPE enum value | BALL::NMRStarFile | [private] |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const CIFFile &file) | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| clear() | BALL::NMRStarFile | [virtual] |
| clear() | BALL::NMRStarFile | [virtual] |
| clear() | BALL::NMRStarFile | [virtual] |
| clear() | BALL::NMRStarFile | [virtual] |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| clearParameters() | BALL::CIFFile | |
| BALL::close() | BALL::File | |
| BALL::LineBasedFile::close() | BALL::File | |
| BALL::copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | [static] |
| BALL::LineBasedFile::copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | [static] |
| BALL::copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
| BALL::LineBasedFile::copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
| BALL::createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | [static] |
| BALL::LineBasedFile::createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | [static] |
| current_datablock_ | BALL::CIFFile | [protected] |
| current_item_ | BALL::CIFFile | [protected] |
| current_saveframe_ | BALL::CIFFile | [protected] |
| datablocks_ | BALL::CIFFile | [protected] |
| datablocks_ | BALL::CIFFile | [protected] |
| datablocks_hash_ | BALL::CIFFile | [protected] |
| DIRECT_TYPE enum value | BALL::NMRStarFile | |
| BALL::disableTransformation(Transformation transformation) | BALL::File | [static] |
| BALL::LineBasedFile::disableTransformation(Transformation transformation) | BALL::File | [static] |
| dummy_monomeric_polymer_ | BALL::NMRStarFile | [private] |
| dummy_NMR_spectrometer_ | BALL::NMRStarFile | [private] |
| dummy_sample_ | BALL::NMRStarFile | [private] |
| dummy_sample_condition_ | BALL::NMRStarFile | [private] |
| dummy_saveframe_ | BALL::NMRStarFile | [private] |
| dummy_shift_reference_set_ | BALL::NMRStarFile | [private] |
| BALL::enableTransformation(Transformation transformation) | BALL::File | [static] |
| BALL::LineBasedFile::enableTransformation(Transformation transformation) | BALL::File | [static] |
| enableTrimWhitespaces(bool state) | BALL::LineBasedFile | |
| entry_information_ | BALL::NMRStarFile | [private] |
| EXTERNAL_REFERENCE enum value | BALL::NMRStarFile | |
| BALL::File() | BALL::File | |
| BALL::File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
| BALL::LineBasedFile::File() | BALL::File | |
| BALL::LineBasedFile::File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
| findDependiencies_() | BALL::NMRStarFile | [private] |
| FLOAT_VALUE_NA | BALL::NMRStarFile | [static] |
| getData() const | BALL::NMRStarFile | |
| getData() const | BALL::NMRStarFile | |
| getData() const | BALL::NMRStarFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getEntryInformation() const | BALL::NMRStarFile | [inline] |
| getEntryInformation() const | BALL::NMRStarFile | [inline] |
| getField(Index pos=0, const String "es="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const | BALL::LineBasedFile | |
| BALL::getFileStream() | BALL::File | |
| BALL::LineBasedFile::getFileStream() | BALL::File | |
| getLine() const | BALL::LineBasedFile | |
| getLine() | BALL::LineBasedFile | |
| getLineNumber() const | BALL::LineBasedFile | |
| getMolecularInformation() const | BALL::NMRStarFile | [inline] |
| getMonomericPolymer(const String &name) | BALL::NMRStarFile | |
| getMonomericPolymer(const String &name) const | BALL::NMRStarFile | |
| getMonomericPolymers() const | BALL::NMRStarFile | [inline] |
| BALL::getName() const | BALL::File | |
| BALL::LineBasedFile::getName() const | BALL::File | |
| getNMRData() const | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) const | BALL::NMRStarFile | |
| getNMRSpectrometerFieldStrength(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerManufacturer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometers() | BALL::NMRStarFile | [inline] |
| getNMRSpectrometers() const | BALL::NMRStarFile | [inline] |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfMonomericPolymers() const | BALL::NMRStarFile | [inline] |
| getNumberOfNMRSpectrometers() const | BALL::NMRStarFile | [inline] |
| getNumberOfSampleConditions() const | BALL::NMRStarFile | [inline] |
| getNumberOfSamples() const | BALL::NMRStarFile | [inline] |
| getNumberOfShiftReferenceSets() const | BALL::NMRStarFile | [inline] |
| getNumberOfShiftsAssigned() const | BALL::NMRStarFile | [inline] |
| BALL::getOpenMode() const | BALL::File | |
| BALL::LineBasedFile::getOpenMode() const | BALL::File | |
| BALL::getOriginalName() const | BALL::File | |
| BALL::LineBasedFile::getOriginalName() const | BALL::File | |
| getResidueSequence(Position i=0) const | BALL::NMRStarFile | |
| getSample(Position i) const | BALL::NMRStarFile | |
| getSample(String label) const | BALL::NMRStarFile | |
| getSampleCondition(Position i) | BALL::NMRStarFile | [inline] |
| getSampleCondition(Position i) const | BALL::NMRStarFile | [inline] |
| getSampleConditionByName(String name) | BALL::NMRStarFile | |
| getSampleConditionByName(String name) const | BALL::NMRStarFile | |
| getSampleConditions() const | BALL::NMRStarFile | [inline] |
| getSampleConditions() | BALL::NMRStarFile | [inline] |
| getSamples() const | BALL::NMRStarFile | [inline] |
| getShiftReferenceSet(Position i) | BALL::NMRStarFile | [inline] |
| getShiftReferenceSet(Position i) const | BALL::NMRStarFile | [inline] |
| getShiftReferenceSetByName(String name) const | BALL::NMRStarFile | |
| getShiftReferenceSetByName(String name) | BALL::NMRStarFile | |
| getShiftReferenceSets() | BALL::NMRStarFile | [inline] |
| getShiftReferenceSets() const | BALL::NMRStarFile | [inline] |
| BALL::getSize() | BALL::File | |
| BALL::getSize(String name) | BALL::File | [static] |
| BALL::LineBasedFile::getSize() | BALL::File | |
| BALL::LineBasedFile::getSize(String name) | BALL::File | [static] |
| BALL::getTransformationManager() | BALL::File | |
| BALL::getTransformationManager() const | BALL::File | |
| BALL::LineBasedFile::getTransformationManager() | BALL::File | |
| BALL::LineBasedFile::getTransformationManager() const | BALL::File | |
| BALL::getType(String name, bool trace_link) | BALL::File | [static] |
| BALL::getType(bool trace_link) const | BALL::File | |
| BALL::LineBasedFile::getType(String name, bool trace_link) | BALL::File | [static] |
| BALL::LineBasedFile::getType(bool trace_link) const | BALL::File | |
| gotoLine(Position line_number) | BALL::LineBasedFile | |
| has(const String &text) const | BALL::LineBasedFile | |
| has_C_shifts_ | BALL::NMRStarFile | [private] |
| has_H_shifts_ | BALL::NMRStarFile | [private] |
| has_N_shifts_ | BALL::NMRStarFile | [private] |
| hasCshifts() const | BALL::NMRStarFile | [inline] |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasHshifts() const | BALL::NMRStarFile | [inline] |
| hasMonomericPolymer(String name) const | BALL::NMRStarFile | |
| hasNshifts() const | BALL::NMRStarFile | [inline] |
| hasSample(String label) const | BALL::NMRStarFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| INDIRECT_SHIFT_RATIO enum value | BALL::NMRStarFile | [private] |
| INDIRECT_TYPE enum value | BALL::NMRStarFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| initializeReferenceOptions_() | BALL::NMRStarFile | [private, static] |
| initializeReferenceOptions_() | BALL::NMRStarFile | [private, static] |
| initializeReferenceOptions_() | BALL::NMRStarFile | [private, static] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| inSafeframe(const char *name) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| INT_VALUE_NA | BALL::NMRStarFile | [static] |
| INTERNAL_REFERENCE enum value | BALL::NMRStarFile | |
| BALL::is_open_ | BALL::File | [protected] |
| BALL::LineBasedFile::is_open_ | BALL::File | [protected] |
| BALL::is_temporary_ | BALL::File | [protected] |
| BALL::LineBasedFile::is_temporary_ | BALL::File | [protected] |
| BALL::isAccessible(String name) | BALL::File | [static] |
| BALL::isAccessible() const | BALL::File | |
| BALL::LineBasedFile::isAccessible(String name) | BALL::File | [static] |
| BALL::LineBasedFile::isAccessible() const | BALL::File | |
| BALL::isCanonized() const | BALL::File | |
| BALL::LineBasedFile::isCanonized() const | BALL::File | |
| BALL::isClosed() const | BALL::File | |
| BALL::LineBasedFile::isClosed() const | BALL::File | |
| BALL::isExecutable(String name) | BALL::File | [static] |
| BALL::isExecutable() const | BALL::File | |
| BALL::LineBasedFile::isExecutable(String name) | BALL::File | [static] |
| BALL::LineBasedFile::isExecutable() const | BALL::File | |
| isMonomericPolymer(String chemical_unit_label) | BALL::NMRStarFile | |
| BALL::isOpen() const | BALL::File | |
| BALL::LineBasedFile::isOpen() const | BALL::File | |
| ISOTOPE_NUMBER enum value | BALL::NMRStarFile | [private] |
| BALL::isReadable(String name) | BALL::File | [static] |
| BALL::isReadable() const | BALL::File | |
| BALL::LineBasedFile::isReadable(String name) | BALL::File | [static] |
| BALL::LineBasedFile::isReadable() const | BALL::File | |
| BALL::isTransformationEnabled(Transformation transformation) | BALL::File | [static] |
| BALL::LineBasedFile::isTransformationEnabled(Transformation transformation) | BALL::File | [static] |
| BALL::isValid() const | BALL::File | |
| BALL::LineBasedFile::isValid() const | BALL::File | |
| isValidSingleValue_(String value) | BALL::NMRStarFile | [private] |
| BALL::isWritable(String name) | BALL::File | [static] |
| BALL::isWritable() const | BALL::File | |
| BALL::LineBasedFile::isWritable(String name) | BALL::File | [static] |
| BALL::LineBasedFile::isWritable() const | BALL::File | |
| line_ | BALL::LineBasedFile | [protected] |
| line_number_ | BALL::LineBasedFile | [protected] |
| LineBasedFile() | BALL::LineBasedFile | |
| LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false) | BALL::LineBasedFile | |
| BALL::MODE_APP | BALL::File | [static] |
| BALL::LineBasedFile::MODE_APP | BALL::File | [static] |
| BALL::MODE_ATE | BALL::File | [static] |
| BALL::LineBasedFile::MODE_ATE | BALL::File | [static] |
| BALL::MODE_BINARY | BALL::File | [static] |
| BALL::LineBasedFile::MODE_BINARY | BALL::File | [static] |
| BALL::MODE_IN | BALL::File | [static] |
| BALL::LineBasedFile::MODE_IN | BALL::File | [static] |
| BALL::MODE_OUT | BALL::File | [static] |
| BALL::LineBasedFile::MODE_OUT | BALL::File | [static] |
| BALL::MODE_TRUNC | BALL::File | [static] |
| BALL::LineBasedFile::MODE_TRUNC | BALL::File | [static] |
| MOL_COMMON_NAME enum value | BALL::NMRStarFile | [private] |
| molecular_system_ | BALL::NMRStarFile | [private] |
| molecule_ | BALL::CIFFile | [protected] |
| monomeric_polymers_ | BALL::NMRStarFile | [private] |
| BALL::move(const String &source_name, const String &destination_name) | BALL::File | [static] |
| BALL::LineBasedFile::move(const String &source_name, const String &destination_name) | BALL::File | [static] |
| BALL::moveTo(const String &destination_name) | BALL::File | |
| BALL::LineBasedFile::moveTo(const String &destination_name) | BALL::File | |
| BALL::name_ | BALL::File | [protected] |
| BALL::LineBasedFile::name_ | BALL::File | [protected] |
| nmr_spectrometers_ | BALL::NMRStarFile | [private] |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name, File::OpenMode open_mode=std::ios::in) | BALL::NMRStarFile | |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const NMRStarFile &f) | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name) | BALL::NMRStarFile | |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name) | BALL::NMRStarFile | |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const NMRStarFile &f) | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name, File::OpenMode open_mode=std::ios::in) | BALL::NMRStarFile | |
| number_of_assigned_shifts_ | BALL::NMRStarFile | [private] |
| number_of_shift_sets_ | BALL::NMRStarFile | [private] |
| number_of_shifts_ | BALL::NMRStarFile | [private] |
| BALL::open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
| BALL::LineBasedFile::open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
| BALL::open_mode_ | BALL::File | [protected] |
| BALL::LineBasedFile::open_mode_ | BALL::File | [protected] |
| BALL::OpenMode typedef | BALL::File | |
| BALL::LineBasedFile::OpenMode typedef | BALL::File | |
| operator!=(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator!=(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator!=(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator!=(const NMRStarFile &f) | BALL::NMRStarFile | |
| BALL::CIFFile::operator!=(const File &file) const | BALL::File | |
| BALL::LineBasedFile::operator!=(const LineBasedFile &f) | BALL::LineBasedFile | |
| BALL::File::operator!=(const File &file) const | BALL::File | |
| operator=(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator=(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator=(const NMRStarFile &f) | BALL::NMRStarFile | |
| BALL::CIFFile::operator=(const CIFFile &rhs) | BALL::CIFFile | |
| BALL::LineBasedFile::operator=(const LineBasedFile &file) | BALL::LineBasedFile | |
| operator==(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator==(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator==(const NMRStarFile &f) | BALL::NMRStarFile | |
| operator==(const NMRStarFile &f) | BALL::NMRStarFile | |
| BALL::CIFFile::operator==(const File &file) const | BALL::File | |
| BALL::LineBasedFile::operator==(const LineBasedFile &f) | BALL::LineBasedFile | |
| BALL::File::operator==(const File &file) const | BALL::File | |
| BALL::original_name_ | BALL::File | [protected] |
| BALL::LineBasedFile::original_name_ | BALL::File | [protected] |
| parseColumnFormat(const char *format, Position index, Size length, void *arg) | BALL::LineBasedFile | |
| POSITION_VALUE_NA | BALL::NMRStarFile | [static] |
| processShiftLine_() | BALL::NMRStarFile | [private] |
| processShiftLine_() | BALL::NMRStarFile | [private] |
| read() | BALL::NMRStarFile | [virtual] |
| read(AtomContainer &ac) | BALL::NMRStarFile | |
| read() | BALL::NMRStarFile | [virtual] |
| readEntryInformation_() | BALL::NMRStarFile | [private] |
| readEntryInformation_() | BALL::NMRStarFile | [private] |
| readEntryInformation_() | BALL::NMRStarFile | [private] |
| readEntryInformation_() | BALL::NMRStarFile | [private] |
| readLine() | BALL::LineBasedFile | |
| readMolSystem_() | BALL::NMRStarFile | [private] |
| readMolSystem_() | BALL::NMRStarFile | [private] |
| readMolSystem_() | BALL::NMRStarFile | [private] |
| readMolSystem_() | BALL::NMRStarFile | [private] |
| readMonomericPolymers_() | BALL::NMRStarFile | [private] |
| readNMRSpectrometer_() | BALL::NMRStarFile | [private] |
| readSampleConditions_() | BALL::NMRStarFile | [private] |
| readSampleConditions_() | BALL::NMRStarFile | [private] |
| readSampleConditions_() | BALL::NMRStarFile | [private] |
| readSampleConditions_() | BALL::NMRStarFile | [private] |
| readSamples_() | BALL::NMRStarFile | [private] |
| readShiftReferences_() | BALL::NMRStarFile | [private] |
| readShiftReferences_() | BALL::NMRStarFile | [private] |
| readShiftReferences_() | BALL::NMRStarFile | [private] |
| readShiftReferences_() | BALL::NMRStarFile | [private] |
| readShifts_() | BALL::NMRStarFile | [private] |
| readShifts_() | BALL::NMRStarFile | [private] |
| readShifts_() | BALL::NMRStarFile | [private] |
| readShifts_() | BALL::NMRStarFile | [private] |
| REFERENCE_METHOD enum value | BALL::NMRStarFile | [private] |
| reference_options_ | BALL::NMRStarFile | [private, static] |
| REFERENCE_TYPE enum value | BALL::NMRStarFile | [private] |
| ReferenceMethod enum name | BALL::NMRStarFile | |
| ReferenceMethod enum name | BALL::NMRStarFile | |
| ReferenceMethod enum name | BALL::NMRStarFile | |
| ReferenceType enum name | BALL::NMRStarFile | |
| ReferenceType enum name | BALL::NMRStarFile | |
| ReferenceType enum name | BALL::NMRStarFile | |
| BALL::registerTransformation(const String &pattern, const String &exec) | BALL::File | [static] |
| BALL::LineBasedFile::registerTransformation(const String &pattern, const String &exec) | BALL::File | [static] |
| BALL::remove(String name) | BALL::File | [static] |
| BALL::remove() | BALL::File | |
| BALL::LineBasedFile::remove(String name) | BALL::File | [static] |
| BALL::LineBasedFile::remove() | BALL::File | |
| BALL::rename(String old_path, String new_path) | BALL::File | [static] |
| BALL::LineBasedFile::rename(String old_path, String new_path) | BALL::File | [static] |
| BALL::renameTo(const String &new_path) | BALL::File | |
| BALL::LineBasedFile::renameTo(const String &new_path) | BALL::File | |
| BALL::reopen() | BALL::File | |
| BALL::reopen(File::OpenMode open_mode) | BALL::File | |
| BALL::LineBasedFile::reopen() | BALL::File | |
| BALL::LineBasedFile::reopen(File::OpenMode open_mode) | BALL::File | |
| rewind() | BALL::LineBasedFile | |
| sample_conditions_ | BALL::NMRStarFile | [private] |
| samples_ | BALL::NMRStarFile | [private] |
| search(const String &text, bool return_to_start=false) | BALL::LineBasedFile | |
| search(const String &text, const String &stop, bool return_to_start=false) | BALL::LineBasedFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| BALL::setName(const String &name) | BALL::File | |
| BALL::LineBasedFile::setName(const String &name) | BALL::File | |
| setSpecialCharacters_(String characters) | BALL::NMRStarFile | [private] |
| shift_references_ | BALL::NMRStarFile | [private] |
| SHIFT_UNITS enum value | BALL::NMRStarFile | [private] |
| SHIFT_VALUE enum value | BALL::NMRStarFile | [private] |
| ShiftReferenceTypes_ enum name | BALL::NMRStarFile | [private] |
| ShiftReferenceTypes_ enum name | BALL::NMRStarFile | [private] |
| ShiftReferenceTypes_ enum name | BALL::NMRStarFile | [private] |
| skipLines(Size number=1) | BALL::LineBasedFile | |
| special_characters_ | BALL::NMRStarFile | [private] |
| startsWith(const String &text) const | BALL::LineBasedFile | |
| state | BALL::CIFFile | [static] |
| switchString(const std::vector< String > &data) const | BALL::LineBasedFile | |
| system_name_ | BALL::NMRStarFile | [private] |
| test(const char *file, int line, bool condition, const String &msg) const | BALL::LineBasedFile | |
| BALL::Transformation enum name | BALL::File | |
| BALL::LineBasedFile::Transformation enum name | BALL::File | |
| BALL::TRANSFORMATION__EXEC enum value | BALL::File | |
| BALL::LineBasedFile::TRANSFORMATION__EXEC enum value | BALL::File | |
| BALL::TRANSFORMATION__FILTER enum value | BALL::File | |
| BALL::LineBasedFile::TRANSFORMATION__FILTER enum value | BALL::File | |
| BALL::TRANSFORMATION__URL enum value | BALL::File | |
| BALL::LineBasedFile::TRANSFORMATION__URL enum value | BALL::File | |
| BALL::TRANSFORMATION_EXEC_PREFIX | BALL::File | [static] |
| BALL::LineBasedFile::TRANSFORMATION_EXEC_PREFIX | BALL::File | [static] |
| BALL::TRANSFORMATION_FILE_PREFIX | BALL::File | [static] |
| BALL::LineBasedFile::TRANSFORMATION_FILE_PREFIX | BALL::File | [static] |
| BALL::TRANSFORMATION_FTP_PREFIX | BALL::File | [static] |
| BALL::LineBasedFile::TRANSFORMATION_FTP_PREFIX | BALL::File | [static] |
| BALL::TRANSFORMATION_HTTP_PREFIX | BALL::File | [static] |
| BALL::LineBasedFile::TRANSFORMATION_HTTP_PREFIX | BALL::File | [static] |
| BALL::transformation_manager_ | BALL::File | [protected, static] |
| BALL::LineBasedFile::transformation_manager_ | BALL::File | [protected, static] |
| BALL::transformation_methods_ | BALL::File | [protected, static] |
| BALL::LineBasedFile::transformation_methods_ | BALL::File | [protected, static] |
| trim_whitespaces_ | BALL::LineBasedFile | [protected] |
| trimWhiteSpacesEnabled() const | BALL::LineBasedFile | |
| BALL::truncate(String path, Size size=0) | BALL::File | [static] |
| BALL::truncate(Size size=0) | BALL::File | |
| BALL::LineBasedFile::truncate(String path, Size size=0) | BALL::File | [static] |
| BALL::LineBasedFile::truncate(Size size=0) | BALL::File | |
| BALL::Type enum name | BALL::File | |
| BALL::LineBasedFile::Type enum name | BALL::File | |
| BALL::TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
| BALL::TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
| BALL::TYPE__DIRECTORY enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__DIRECTORY enum value | BALL::File | |
| BALL::TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
| BALL::TYPE__REGULAR_FILE enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__REGULAR_FILE enum value | BALL::File | |
| BALL::TYPE__SOCKET enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__SOCKET enum value | BALL::File | |
| BALL::TYPE__SYMBOLIC_LINK enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__SYMBOLIC_LINK enum value | BALL::File | |
| BALL::TYPE__UNKNOWN enum value | BALL::File | |
| BALL::LineBasedFile::TYPE__UNKNOWN enum value | BALL::File | |
| UNKNOWN_REFERENCE enum value | BALL::NMRStarFile | |
| UNKNOWN_TYPE enum value | BALL::NMRStarFile | |
| BALL::unregisterTransformation(const String &pattern) | BALL::File | [static] |
| BALL::LineBasedFile::unregisterTransformation(const String &pattern) | BALL::File | [static] |
| UNSET_REFERENCE enum value | BALL::NMRStarFile | |
| UNSET_TYPE enum value | BALL::NMRStarFile | |
| valid_ | BALL::NMRStarFile | [private] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| write() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~File() | BALL::File | [virtual] |
| ~NMRStarFile() | BALL::NMRStarFile | |
| ~NMRStarFile() | BALL::NMRStarFile | |
| ~NMRStarFile() | BALL::NMRStarFile | |
| ~NMRStarFile() | BALL::NMRStarFile | |
