, including all inherited members.
| ASSEMBLED enum value | BALL::SDGenerator | |
| assembleSD_() | BALL::SDGenerator | [protected] |
| attachBridged_(Position current_ring, std::vector< RingAnalyser::Ring > ¤t_system) | BALL::SDGenerator | [protected] |
| attachCore_(Position current_ring, std::vector< RingAnalyser::Ring > ¤t_system, float x_start) | BALL::SDGenerator | [protected] |
| attachFused_(Position current_ring, std::vector< RingAnalyser::Ring > ¤t_system) | BALL::SDGenerator | [protected] |
| attachSpiro_(Position current_ring, std::vector< RingAnalyser::Ring > ¤t_system) | BALL::SDGenerator | [protected] |
| attachTemplate_(Position current_ring, std::vector< RingAnalyser::Ring > ¤t_system) | BALL::SDGenerator | [protected] |
| buildOpenPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, Position second_anchor_index) | BALL::SDGenerator | [protected] |
| buildRegularPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, bool clockwise) | BALL::SDGenerator | [protected] |
| chains_ | BALL::SDGenerator | [protected] |
| checkOverlap_(Atom *atom) | BALL::SDGenerator | [protected] |
| clear() | BALL::SDGenerator | |
| compareChains_(const vector< Atom * > &x, const vector< Atom * > &y) | BALL::SDGenerator | [protected, static] |
| computeAdjacencyMatrix_(std::vector< Atom * > &chain, std::vector< bool > &result) | BALL::SDGenerator | [protected] |
| computeAngularDemand_(Atom *seed) | BALL::SDGenerator | [protected] |
| computeAngularSeparation_(Atom *seed) | BALL::SDGenerator | [protected] |
| computeCFS_(Vector3 const &input) | BALL::SDGenerator | [protected] |
| computeCoreCFS_(RingAnalyser::Ring &ring, bool clockwise) | BALL::SDGenerator | [protected] |
| computeShelleyPriorities_() | BALL::SDGenerator | [protected] |
| constructRingSystem_(Position current_ring_system) | BALL::SDGenerator | [protected] |
| CORE_CHAIN enum value | BALL::SDGenerator | |
| DEPOSITED enum value | BALL::SDGenerator | |
| depositPFU_(Atom *seed_atom, Atom *next_neighbour) | BALL::SDGenerator | [protected] |
| EDGE enum value | BALL::SDGenerator | |
| EQAS enum value | BALL::SDGenerator | |
| findFloydWarshallPath_(std::vector< int > &path, std::vector< Index > &next, Size remaining_atoms, Position i, Position j, std::list< Index > &output) | BALL::SDGenerator | [protected] |
| FIRST_SDGENERATOR_PROPERTY enum value | BALL::SDGenerator | |
| FXAS enum value | BALL::SDGenerator | |
| generateSD(System &molecule_sys) | BALL::SDGenerator | |
| getBackupCFS_(Atom const *, bool hi) | BALL::SDGenerator | [protected] |
| getCFS_(Atom const *atom, bool hi) | BALL::SDGenerator | [protected] |
| HEAD enum value | BALL::SDGenerator | |
| IN_RING enum value | BALL::SDGenerator | |
| INITIALIZED_HEAD_CFS enum value | BALL::SDGenerator | |
| LAST_SDGENERATOR_PROPERTY enum value | BALL::SDGenerator | |
| options | BALL::SDGenerator | |
| placeSubstituent_(Atom *seed, Atom *head, Atom *next) | BALL::SDGenerator | [protected] |
| prepare_() | BALL::SDGenerator | [protected] |
| Property enum name | BALL::SDGenerator | |
| pushCFS_(Atom *atom) | BALL::SDGenerator | [protected] |
| redraw_queue_ | BALL::SDGenerator | [protected] |
| ring_analyser_ | BALL::SDGenerator | [protected] |
| ringIsClockwise_(const RingAnalyser::Ring &ring, Index start_index=0) const | BALL::SDGenerator | [protected] |
| SDGenerator(bool show_hydrogens=false) | BALL::SDGenerator | |
| sequenceSubstituents_(Atom *seed) | BALL::SDGenerator | [protected] |
| setCFS_(Atom *atom, Angle cfs, bool high) | BALL::SDGenerator | [protected] |
| setDefaultOptions() | BALL::SDGenerator | |
| smoothCFSAngle_(Atom *seed) | BALL::SDGenerator | [protected] |
| system_ | BALL::SDGenerator | [protected] |
| treatChains_() | BALL::SDGenerator | [protected] |
| ZAG enum value | BALL::SDGenerator | |
| ZIG enum value | BALL::SDGenerator | |
| ~SDGenerator() | BALL::SDGenerator | [virtual] |
