, including all inherited members.
| conventions_ | BALL::Peptides::NameConverter | [protected] |
| conversion_table_ | BALL::Peptides::NameConverter | [protected] |
| convertName(const String &amino_acid, const String &old_atom_name, const String &old_naming_scheme, const String &new_naming_scheme) const | BALL::Peptides::NameConverter | |
| countInstances_(const std::type_info &type) | BALL::Embeddable | [protected, static] |
| dump(std::ostream &s=std::cout, Size depth=0) const | BALL::Embeddable | [virtual] |
| Embeddable(const String &identifier="<Embeddable>") | BALL::Embeddable | |
| Embeddable(const Embeddable &embeddable) | BALL::Embeddable | |
| EmbeddableVector typedef | BALL::Embeddable | |
| getIdentifier() const | BALL::Embeddable | |
| getInstance_(const std::type_info &type, Position index) | BALL::Embeddable | [protected, static] |
| getInstance_(const std::type_info &type, const String &identifier) | BALL::Embeddable | [protected, static] |
| matches(const String &amino_acid, const String &old_atom_name, const String &old_naming_scheme, const String &new_atom_name, const String &new_naming_scheme) const | BALL::Peptides::NameConverter | |
| NameConverter() | BALL::Peptides::NameConverter | |
| options | BALL::Peptides::NameConverter | |
| pseudo_conventions_ | BALL::Peptides::NameConverter | [protected] |
| pseudo_conversion_table_ | BALL::Peptides::NameConverter | [protected] |
| readConversionTable_() | BALL::Peptides::NameConverter | [protected] |
| readPseudoAtomsConversionTable_() | BALL::Peptides::NameConverter | [protected] |
| registerInstance_(const std::type_info &type, const Embeddable *instance) | BALL::Embeddable | [protected, static] |
| registerThis() | BALL::Embeddable | [virtual] |
| resolvePseudoAtoms(const String &amino_acid, const String &atom_name, const String &old_naming_scheme, const String &new_naming_scheme) const | BALL::Peptides::NameConverter | |
| setDefaultOptions() | BALL::Peptides::NameConverter | |
| setIdentifier(const String &identifier) | BALL::Embeddable | |
| supportsNamingScheme(const String &scheme_name) const | BALL::Peptides::NameConverter | |
| supportsPseudoAtomNamingScheme(const String &scheme_name) const | BALL::Peptides::NameConverter | |
| unregisterInstance_(const Embeddable *instance) | BALL::Embeddable | [protected, static] |
| unregisterThis() | BALL::Embeddable | |
| VALUE_NA | BALL::Peptides::NameConverter | [static] |
| ~Embeddable() | BALL::Embeddable | [virtual] |
| ~NameConverter() | BALL::Peptides::NameConverter | [inline, virtual] |
