#include <BALL/FORMAT/PDBRecords.h>

Inheritance diagram for BALL::PDBRecords:

Public Types
typedef std::vector< String > ::iterator	Iterator

typedef std::vector< String > ::iterator	iterator

typedef std::vector< String > ::const_iterator	ConstIterator

typedef std::vector< String > ::const_iterator	const_iterator

typedef std::vector< String > ::reverse_iterator	ReverseIterator

typedef std::vector< String > ::reverse_iterator	reverse_iterator

typedef std::vector< String > ::const_reverse_iterator	ConstReverseIterator

typedef std::vector< String > ::const_reverse_iterator	const_reverse_iterator

typedef String	value_type

typedef String	ValueType

typedef String &	reference

typedef String &	Reference

typedef const String &	const_reference

typedef const String &	ConstReference

typedef std::vector< String > ::difference_type	difference_type

typedef std::vector< String > ::difference_type	DifferenceType

typedef std::vector< String > ::size_type	size_type

typedef std::vector< String > ::size_type	SizeType

Public Member Functions
Constructors and Destructor
	PDBRecords ()

	PDBRecords (const PDBRecords &pdbi)

virtual	~PDBRecords ()


PDBRecords &	operator= (const PDBRecords &rhs)


ConstIterator	begin () const

Iterator	begin ()

ConstIterator	end () const

Iterator	end ()

ConstReverseIterator	rbegin () const

ReverseIterator	rbegin ()

ConstReverseIterator	rend () const

ReverseIterator	rend ()

SizeType	size () const

SizeType	max_size () const

SizeType	capacity () const

bool	empty () const

void	clear ()
	Clear function of the OCI, doing nothing here. More...

void	resize (SizeType sz, ValueType c=ValueType())

Reference	front ()

ConstReference	front () const

Reference	back ()

ConstReference	back () const

void	push_back (ConstReference x)

void	insert (Iterator pos, ConstReference value)

void	insert (Iterator pos, SizeType n, ConstReference value)

void	pop_back ()

Iterator	erase (Iterator pos)

Iterator	erase (Iterator first, Iterator last)

bool	operator== (const PDBRecords &rhs) const

bool	operator!= (const PDBRecords &rhs) const

bool	operator< (const PDBRecords &rhs) const

bool	operator> (const PDBRecords &rhs) const

bool	operator<= (const PDBRecords &rhs) const

bool	operator>= (const PDBRecords &rhs) const

void	swap (PDBRecords &rhs)

ConstReference	operator[] (SizeType n) const

Reference	operator[] (SizeType n)

ConstReference	at (SizeType n) const

Reference	at (SizeType n)

Storable Interface
void	persistentWrite (PersistenceManager &pm, const char *name) const

void	persistentRead (PersistenceManager &pm)

Public Member Functions inherited from BALL::PersistentObject
	PersistentObject ()

virtual	~PersistentObject ()

PersistenceManager &	operator>> (PersistenceManager &pm) const

virtual void	finalize ()

Public Member Functions inherited from BALL::Object
	Object ()
	Default constructor. More...

	Object (const Object &object)
	Copy constructor. More...

virtual	~Object ()
	Destructor. More...

const Object &	operator= (const Object &)

bool	operator== (const Object &object) const

bool	operator!= (const Object &object) const

bool	operator< (const Object &object) const

bool	operator<= (const Object &object) const

bool	operator>= (const Object &object) const

bool	operator> (const Object &object) const

int	compare (const Object &object) const

virtual bool	isValid () const

virtual void	dump (::std::ostream &s=std::cout, Size depth=0) const

Handle	getHandle () const

Public Member Functions inherited from BALL::AutoDeletable
virtual	~AutoDeletable ()

void *	operator new (size_t size)

void	operator delete (void *ptr)

void *	operator new (size_t size, void *ptr)

void	operator delete (void ptr, void )

bool	isAutoDeletable () const

void	setAutoDeletable (bool enable)

Protected Attributes
std::vector< String >	records_
	The PDB record buffer. More...

Additional Inherited Members
Static Public Member Functions inherited from BALL::Object
static Handle	getNextHandle ()

static Handle	getNewHandle ()

Static Public Member Functions inherited from BALL::AutoDeletable
static void	clearLastPtr ()

Protected Member Functions inherited from BALL::AutoDeletable
	AutoDeletable ()

	AutoDeletable (const AutoDeletable &auto_deletable, bool deep=false)

Detailed Description

PDB record class. This class contains PDB records in an undigested format and provides some means of digesting this format. It is meant to capture all records not parsed by GenericPDBFile and PDBFile.

: The class fulfills the requirements of an STL container and behaves mostly like the vector of Strings it actually is.

Definition at line 31 of file PDBRecords.h.

Member Typedef Documentation

typedef std::vector<String>::const_iterator BALL::PDBRecords::const_iterator

Definition at line 40 of file PDBRecords.h.

typedef const String& BALL::PDBRecords::const_reference

Definition at line 49 of file PDBRecords.h.

typedef std::vector<String>::const_reverse_iterator BALL::PDBRecords::const_reverse_iterator

Definition at line 44 of file PDBRecords.h.

typedef std::vector<String>::const_iterator BALL::PDBRecords::ConstIterator

Definition at line 39 of file PDBRecords.h.

typedef const String& BALL::PDBRecords::ConstReference

Definition at line 50 of file PDBRecords.h.

typedef std::vector<String>::const_reverse_iterator BALL::PDBRecords::ConstReverseIterator

Definition at line 43 of file PDBRecords.h.

typedef std::vector<String>::difference_type BALL::PDBRecords::difference_type

Definition at line 51 of file PDBRecords.h.

typedef std::vector<String>::difference_type BALL::PDBRecords::DifferenceType

Definition at line 52 of file PDBRecords.h.

typedef std::vector<String>::iterator BALL::PDBRecords::Iterator

Definition at line 37 of file PDBRecords.h.

typedef std::vector<String>::iterator BALL::PDBRecords::iterator

Definition at line 38 of file PDBRecords.h.

typedef String& BALL::PDBRecords::reference

Definition at line 47 of file PDBRecords.h.

typedef String& BALL::PDBRecords::Reference

Definition at line 48 of file PDBRecords.h.

typedef std::vector<String>::reverse_iterator BALL::PDBRecords::reverse_iterator

Definition at line 42 of file PDBRecords.h.

typedef std::vector<String>::reverse_iterator BALL::PDBRecords::ReverseIterator

Definition at line 41 of file PDBRecords.h.

typedef std::vector<String>::size_type BALL::PDBRecords::size_type

Definition at line 53 of file PDBRecords.h.

typedef std::vector<String>::size_type BALL::PDBRecords::SizeType

Definition at line 54 of file PDBRecords.h.

typedef String BALL::PDBRecords::value_type

Definition at line 45 of file PDBRecords.h.

typedef String BALL::PDBRecords::ValueType

Definition at line 46 of file PDBRecords.h.

Constructor & Destructor Documentation

BALL::PDBRecords::PDBRecords ( )

BALL::PDBRecords::PDBRecords ( const PDBRecords & pdbi )

virtual BALL::PDBRecords::~PDBRecords ( )

virtual

Member Function Documentation

ConstReference BALL::PDBRecords::at ( SizeType n ) const

inline

Random access operator

Exceptions

std::out_of_range if n < 0 || n >= size()

Definition at line 149 of file PDBRecords.h.

Reference BALL::PDBRecords::at ( SizeType n )

inline

Random access operator

Exceptions

std::out_of_range if n < 0 || n >= size()

Definition at line 153 of file PDBRecords.h.

Reference BALL::PDBRecords::back ( )

inline

Definition at line 113 of file PDBRecords.h.

ConstReference BALL::PDBRecords::back ( ) const

inline

Definition at line 115 of file PDBRecords.h.

ConstIterator BALL::PDBRecords::begin ( ) const

inline

STL container compatibility interface. These methods just wrap the corresponding methods of std::vector. Refer to STL documentation for details.

Definition at line 81 of file PDBRecords.h.

Iterator BALL::PDBRecords::begin ( )

inline

Definition at line 83 of file PDBRecords.h.

SizeType BALL::PDBRecords::capacity ( ) const

inline

Definition at line 101 of file PDBRecords.h.

void BALL::PDBRecords::clear ( )

inlinevirtual

Clear function of the OCI, doing nothing here.

Reimplemented from BALL::Object.

Definition at line 105 of file PDBRecords.h.

bool BALL::PDBRecords::empty ( ) const

inline

Definition at line 103 of file PDBRecords.h.

ConstIterator BALL::PDBRecords::end ( ) const

inline

Definition at line 85 of file PDBRecords.h.

Iterator BALL::PDBRecords::end ( )

inline

Definition at line 87 of file PDBRecords.h.

Iterator BALL::PDBRecords::erase ( Iterator pos )

inline

Definition at line 125 of file PDBRecords.h.

Iterator BALL::PDBRecords::erase	(	Iterator	first,
		Iterator	last
	)

inline

Definition at line 127 of file PDBRecords.h.

Reference BALL::PDBRecords::front ( )

inline

Definition at line 109 of file PDBRecords.h.

ConstReference BALL::PDBRecords::front ( ) const

inline

Definition at line 111 of file PDBRecords.h.

void BALL::PDBRecords::insert	(	Iterator	pos,
		ConstReference	value
	)

inline

Definition at line 119 of file PDBRecords.h.

void BALL::PDBRecords::insert	(	Iterator	pos,
		SizeType	n,
		ConstReference	value
	)

inline

Definition at line 121 of file PDBRecords.h.

SizeType BALL::PDBRecords::max_size ( ) const

inline

Definition at line 99 of file PDBRecords.h.

bool BALL::PDBRecords::operator!= ( const PDBRecords & rhs ) const

inline

Definition at line 131 of file PDBRecords.h.

bool BALL::PDBRecords::operator< ( const PDBRecords & rhs ) const

inline

Definition at line 133 of file PDBRecords.h.

bool BALL::PDBRecords::operator<= ( const PDBRecords & rhs ) const

inline

Definition at line 137 of file PDBRecords.h.

PDBRecords& BALL::PDBRecords::operator= ( const PDBRecords & rhs )

Assignment

bool BALL::PDBRecords::operator== ( const PDBRecords & rhs ) const

inline

Definition at line 129 of file PDBRecords.h.

bool BALL::PDBRecords::operator> ( const PDBRecords & rhs ) const

inline

Definition at line 135 of file PDBRecords.h.

bool BALL::PDBRecords::operator>= ( const PDBRecords & rhs ) const

inline

Definition at line 139 of file PDBRecords.h.

ConstReference BALL::PDBRecords::operator[] ( SizeType n ) const

inline

Definition at line 143 of file PDBRecords.h.

Reference BALL::PDBRecords::operator[] ( SizeType n )

inline

Definition at line 145 of file PDBRecords.h.

void BALL::PDBRecords::persistentRead ( PersistenceManager & pm )

virtual

Persistent stream reading.

Reimplemented from BALL::PersistentObject.

void BALL::PDBRecords::persistentWrite	(	PersistenceManager &	pm,
		const char *	name
	)		const

virtual

Persistent stream writing.

Reimplemented from BALL::PersistentObject.

void BALL::PDBRecords::pop_back ( )

inline

Definition at line 123 of file PDBRecords.h.

void BALL::PDBRecords::push_back ( ConstReference x )

inline

Definition at line 117 of file PDBRecords.h.

ConstReverseIterator BALL::PDBRecords::rbegin ( ) const

inline

Definition at line 89 of file PDBRecords.h.

ReverseIterator BALL::PDBRecords::rbegin ( )

inline

Definition at line 91 of file PDBRecords.h.

ConstReverseIterator BALL::PDBRecords::rend ( ) const

inline

Definition at line 93 of file PDBRecords.h.

ReverseIterator BALL::PDBRecords::rend ( )

inline

Definition at line 95 of file PDBRecords.h.

void BALL::PDBRecords::resize	(	SizeType	sz,
		ValueType	c = `ValueType()`
	)

inline

Definition at line 107 of file PDBRecords.h.

SizeType BALL::PDBRecords::size ( ) const

inline

Definition at line 97 of file PDBRecords.h.

void BALL::PDBRecords::swap ( PDBRecords & rhs )

inline

Definition at line 141 of file PDBRecords.h.

Member Data Documentation

std::vector<String> BALL::PDBRecords::records_

protected

The PDB record buffer.

Definition at line 174 of file PDBRecords.h.

Public Types

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation