Inheritance diagram for BALL::FragmentDB::NormalizeNamesProcessor:

Public Member Functions
Constructors and Destructors
	NormalizeNamesProcessor ()

	NormalizeNamesProcessor (FragmentDB &db)

virtual	~NormalizeNamesProcessor ()

Inspectors and Mutators
void	setFragmentDB (FragmentDB &db)

void	setNamingStandard (const String &naming_standard)

const String &	getNamingStandard ()

bool	matchName (String &res_name, String &atom_name, const NameMap &map) const

Processor specific methods
virtual bool	start ()

virtual bool	finish ()

virtual Processor::Result	operator() (Fragment &fragment)

Public Member Functions inherited from BALL::UnaryProcessor< Fragment >
	UnaryProcessor ()

	UnaryProcessor (const UnaryProcessor &)

virtual	~UnaryProcessor ()

Additional Inherited Members
Public Types inherited from BALL::UnaryFunctor< Fragment, Processor::Result >
typedef Processor::Result	result_type

typedef Fragment	argument_type

typedef Fragment &	argument_reference

typedef const Fragment &	const_argument_reference

typedef Fragment *	argument_pointer

typedef const Fragment *	const_argument_pointer

Detailed Description

Name normalization processor. This class is used to adopt all names in a molecular system to a given naming standard (usually the PDB standard).

Definition at line 254 of file fragmentDB.h.

Constructor & Destructor Documentation

BALL::FragmentDB::NormalizeNamesProcessor::NormalizeNamesProcessor ( )

Default constructor

BALL::FragmentDB::NormalizeNamesProcessor::NormalizeNamesProcessor ( FragmentDB & db )

Constructor

virtual BALL::FragmentDB::NormalizeNamesProcessor::~NormalizeNamesProcessor ( )

virtual

Destructor

virtual bool BALL::FragmentDB::NormalizeNamesProcessor::finish ( )

virtual

Finish method

const String& BALL::FragmentDB::NormalizeNamesProcessor::getNamingStandard ( )

Retrieve the current naming standard

bool BALL::FragmentDB::NormalizeNamesProcessor::matchName	(	String &	res_name,
		String &	atom_name,
		const NameMap &	map
	)		const

Try to match a name in one of the maps

virtual Processor::Result BALL::FragmentDB::NormalizeNamesProcessor::operator() ( Fragment & fragment )

virtual

Application method

void BALL::FragmentDB::NormalizeNamesProcessor::setFragmentDB ( FragmentDB & db )

Bind the processor to a fragment database.

void BALL::FragmentDB::NormalizeNamesProcessor::setNamingStandard ( const String & naming_standard )

virtual bool BALL::FragmentDB::NormalizeNamesProcessor::start ( )

virtual

Start method