#include <BALL/STRUCTURE/triangulatedSAS.h>

Inheritance diagram for BALL::TriangulatedSAS:

Public Member Functions
Constructors and Destructors
	TriangulatedSAS ()

	TriangulatedSAS (const TriangulatedSAS &surface, bool=true)

	TriangulatedSAS (SolventAccessibleSurface *sas, const double &density)

virtual	~TriangulatedSAS ()

Assignment
void	set (const TriangulatedSAS &surface, bool=true)

TriangulatedSAS &	operator= (const TriangulatedSAS &surface)

Accessors
void	setDensity (const double &density)

double	getDensity () const

void	compute ()

Public Member Functions inherited from BALL::TriangulatedSurface
	TriangulatedSurface ()

	TriangulatedSurface (const TriangulatedSurface &surface, bool=true)

virtual	~TriangulatedSurface ()

void	clear ()

void	set (const TriangulatedSurface &surface, bool=true)

TriangulatedSurface &	operator= (const TriangulatedSurface &surface)

void	insert (TrianglePoint *point)

void	insert (TriangleEdge *edge)

void	insert (Triangle *triangle)

BALL_DEPRECATED Size	numberOfPoints () const

Size	getNumberOfPoints () const

BALL_DEPRECATED Size	numberOfEdges () const

Size	getNumberOfEdges () const

BALL_DEPRECATED Size	numberOfTriangles () const

Size	getNumberOfTriangles () const

void	remove (TrianglePoint *point, bool deep=true)

void	remove (PointIterator p, bool deep=true)

void	remove (TriangleEdge *edge, bool deep=true)

void	remove (EdgeIterator e, bool deep=true)

void	remove (Triangle *triangle, bool deep=true)

void	remove (TriangleIterator t, bool deep=true)

void	exportSurface (Surface &surface)

TriangulatedSurface &	operator+= (const TriangulatedSurface &surface)

void	join (TriangulatedSurface &source)

void	shift (const TVector3< double > &c)

void	blowUp (const double &r)

void	setIndices ()

void	setDensity (const double &density)

double	getDensity () const

void	cut (const TPlane3< double > &plane, const double &fuzzy=0)

void	shrink ()

void	deleteIsolatedEdges ()

void	deleteIsolatedPoints ()

void	getBorder (std::list< TriangleEdge * > &border)

PointIterator	beginPoint ()

ConstPointIterator	beginPoint () const

PointIterator	endPoint ()

ConstPointIterator	endPoint () const

EdgeIterator	beginEdge ()

ConstEdgeIterator	beginEdge () const

EdgeIterator	endEdge ()

ConstEdgeIterator	endEdge () const

TriangleIterator	beginTriangle ()

ConstTriangleIterator	beginTriangle () const

TriangleIterator	endTriangle ()

ConstTriangleIterator	endTriangle () const

Protected Attributes

SolventAccessibleSurface *	sas_

double	density_

Protected Attributes inherited from BALL::TriangulatedSurface
Size	number_of_points_

std::list< TrianglePoint * >	points_

Size	number_of_edges_

std::list< TriangleEdge * >	edges_

Size	number_of_triangles_

std::list< Triangle * >	triangles_

double	density_

Friends
Class friends
class SASTriangulator
class	SASTriangulator

Additional Inherited Members
Public Types inherited from BALL::TriangulatedSurface
typedef std::list < TrianglePoint * >::iterator	PointIterator

typedef std::list < TrianglePoint * > ::const_iterator	ConstPointIterator

typedef std::list < TriangleEdge * >::iterator	EdgeIterator

typedef std::list < TriangleEdge * > ::const_iterator	ConstEdgeIterator

typedef std::list< Triangle * > ::iterator	TriangleIterator

typedef std::list< Triangle * > ::const_iterator	ConstTriangleIterator

Static Public Member Functions inherited from BALL::TriangulatedSurface
static TriangulatedSurface *	createTube (unsigned int num_vertices, unsigned int subdiv=0, bool closed=false, bool out=true)

static TriangulatedSurface *	createDisk (unsigned int num_vertices, bool out=true)

Protected Member Functions inherited from BALL::TriangulatedSurface
bool	canBeCopied () const

void	copy (const TriangulatedSurface &surface)

Detailed Description

Generic TriangulatedSAS Class.

Definition at line 62 of file triangulatedSAS.h.

Constructor & Destructor Documentation

BALL::TriangulatedSAS::TriangulatedSAS ( )

Default constructor. This method creates a new TriangulatedSAS object.

BALL::TriangulatedSAS::TriangulatedSAS	(	const TriangulatedSAS &	surface,
		bool	= `true`
	)

Copy constructor. Create a new TriangulatedSAS object from another.

Parameters

surface	the TriangulatedSAS object to be copied
bool	ignored - just for interface consistency

BALL::TriangulatedSAS::TriangulatedSAS	(	SolventAccessibleSurface *	sas,
		const double &	density
	)

Detailed constructor. Create a new empty TriangulatedSAS object and set its SAS.

Parameters

sas	a pointer to the corresponding SAS
density	the density to use by triangulation

virtual BALL::TriangulatedSAS::~TriangulatedSAS ( )

virtual

Destructor. Destructs the TriangulatedSAS object.

Member Function Documentation

void BALL::TriangulatedSAS::compute ( )

Compute the solvent-accessible surface

double BALL::TriangulatedSAS::getDensity ( ) const

Get the density used by triangulation.

TriangulatedSAS& BALL::TriangulatedSAS::operator= ( const TriangulatedSAS & surface )

Assign from another TriangulatedSAS.

Parameters

surface the TriangulatedSAS object to assign from

void BALL::TriangulatedSAS::set	(	const TriangulatedSAS &	surface,
		bool	= `true`
	)

Assign from another TriangulatedSAS.

Parameters

surface	the TriangulatedSAS object to assign from
bool	ignored - just for interface consistency

void BALL::TriangulatedSAS::setDensity ( const double & density )

Set the density used by triangulation.

Friends And Related Function Documentation

friend class SASTriangulator

friend

Definition at line 72 of file triangulatedSAS.h.

Member Data Documentation

double BALL::TriangulatedSAS::density_

protected

Definition at line 148 of file triangulatedSAS.h.

SolventAccessibleSurface* BALL::TriangulatedSAS::sas_

protected

Definition at line 146 of file triangulatedSAS.h.

Public Member Functions

Protected Attributes

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation