#include <OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h>
#include <OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h>
#include <OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h>
#include <OpenMS/ANALYSIS/TARGETED/MetaboTargetedTargetDecoy.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/FILTERING/CALIBRATION/PrecursorCorrection.h>
#include <OpenMS/FILTERING/DATAREDUCTION/Deisotoper.h>
#include <OpenMS/FORMAT/DATAACCESS/SiriusFragmentAnnotation.h>
#include <OpenMS/FORMAT/DATAACCESS/SiriusMzTabWriter.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/TraMLFile.h>
#include <OpenMS/KERNEL/RangeUtils.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/SYSTEM/File.h>
#include <QDir>
#include <algorithm>
#include <map>