#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h>
#include <OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CHEMISTRY/ProteaseDB.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/IdXMLFile.h>