#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/QC/DBSuitability.h>
#include <OpenMS/QC/Ms2IdentificationRate.h>
#include <OpenMS/QC/PSMExplainedIonCurrent.h>
#include <algorithm>
#include <cmath>
#include <cstdio>