#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/FileHandler.h>