#include <OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/VersionInfo.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <algorithm>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h>