#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h>
#include <OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h>
#include <QDir>