#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/MzIdentMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/MzTabFile.h>
#include <OpenMS/FORMAT/TransformationXMLFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/MetaInfoInterfaceUtils.h>
#include <OpenMS/QC/Contaminants.h>
#include <OpenMS/QC/FragmentMassError.h>
#include <OpenMS/QC/FWHM.h>
#include <OpenMS/QC/MissedCleavages.h>
#include <OpenMS/QC/Ms2IdentificationRate.h>
#include <OpenMS/QC/MzCalibration.h>
#include <OpenMS/QC/PeptideMass.h>
#include <OpenMS/QC/PSMExplainedIonCurrent.h>
#include <OpenMS/QC/RTAlignment.h>
#include <OpenMS/QC/TIC.h>
#include <OpenMS/QC/Ms2SpectrumStats.h>
#include <OpenMS/QC/MQEvidenceExporter.h>
#include <OpenMS/QC/MQMsmsExporter.h>
#include <OpenMS/QC/MQExporterHelper.h>
#include <cstdio>
#include <map>