#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <map>