Static Public Member Functions
static void	writeTagHeader (std::fstream &fs)
	write header line for tag output file More...

static void	writePrSMHeader (std::fstream &fs)
	write header line for PrSM output file More...

static void	writeProHeader (std::fstream &fs)
	write header line for Proteoform output file More...

static void	writeTags (const FLASHTnTAlgorithm &tnt, double flanking_mass_tol, std::fstream &fs)
	write the features in regular file output More...

static void	writePrSMs (const std::vector< ProteinHit > &hits, std::fstream &fs)

static String	generateProFormaString_ (const String &sequence, int seq_start, int seq_end, const std::vector< double > &mod_masses, const std::vector< int > &mod_starts, const std::vector< int > &mod_ends, const std::vector< String > &mod_ids)

static void	writeProteoforms (const std::vector< ProteinHit > &hits, std::fstream &fs, double pro_fdr)

Member Function Documentation

◆ generateProFormaString_()

static String generateProFormaString_	(	const String &	sequence,
		int	seq_start,
		int	seq_end,
		const std::vector< double > &	mod_masses,
		const std::vector< int > &	mod_starts,
		const std::vector< int > &	mod_ends,
		const std::vector< String > &	mod_ids
	)