LogStream.h File Reference

#include <OpenMS/CONCEPT/Macros.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <sstream>
#include <iostream>
#include <list>
#include <vector>
#include <ctime>
#include <map>

Go to the source code of this file.

Classes
class	LogStreamBuf
	Stream buffer used by LogStream. More...
struct	LogStreamBuf::StreamStruct
	Holds a stream that is connected to the LogStream. It also includes the minimum and maximum level at which the LogStream redirects messages to this stream. More...
struct	LogStreamBuf::LogCacheStruct
	Holds a counter of occurrences and an index for the occurrence sequence of the corresponding log message. More...
class	LogStreamNotifier
class	LogStream
	Log Stream Class. More...

Namespaces
	OpenMS
	Main OpenMS namespace.
	OpenMS::Logger
	Log streams.

Macros
#define	OPENMS_LOG_FATAL_ERROR
	Macro to be used if fatal error are reported (processing stops) More...
#define	OPENMS_LOG_ERROR
	Macro to be used if non-fatal error are reported (processing continues) More...
#define	OPENMS_LOG_WARN
	Macro if a warning, a piece of information which should be read by the user, should be logged. More...
#define	OPENMS_LOG_INFO
	Macro if a information, e.g. a status should be reported. More...
#define	OPENMS_LOG_DEBUG
	Macro for general debugging information. More...
#define	OPENMS_LOG_DEBUG_NOFILE
	Macro for general debugging information (without information on file) More...

Variables
Logger::LogStream	OpenMS_Log_fatal
	Global static instance of a LogStream to capture messages classified as fatal errors. By default it is bound to cerr. More...
Logger::LogStream	OpenMS_Log_error
	Global static instance of a LogStream to capture messages classified as errors. By default it is bound to cerr. More...
Logger::LogStream	OpenMS_Log_warn
	Global static instance of a LogStream to capture messages classified as warnings. By default it is bound to cout. More...
Logger::LogStream	OpenMS_Log_info
	Global static instance of a LogStream to capture messages classified as information. By default it is bound to cout. More...
Logger::LogStream	OpenMS_Log_debug
	Global static instance of a LogStream to capture messages classified as debug output. By default it is not bound to any output stream. TOPP(AS)Base will connect cout, iff 0 < debug-level. More...

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Class Documentation

OpenMS::Logger::LogStreamBuf::LogCacheStruct

struct OpenMS::Logger::LogStreamBuf::LogCacheStruct

Holds a counter of occurrences and an index for the occurrence sequence of the corresponding log message.

Class Members
int	counter
Size	timestamp

Macro Definition Documentation

OPENMS_LOG_DEBUG

#define OPENMS_LOG_DEBUG

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_debug << [](){ constexpr const char* x = (past_last_slash(__FILE__)); return x; }() << "(" << __LINE__ << "): "

Macro for general debugging information.

Referenced by MRMTransitionGroupPicker::computeQuality_(), FullSwathFileConsumer::consumeSpectrum(), MRMTransitionGroupPicker::createMRMFeature(), DecoyHelper::findDecoyString(), TOPPOpenSwathBase::loadSwathFiles(), NucleicAcidSearchEngine::main_(), NucleicAcidSearchEngine::parseAdduct_(), PeakPickerIterative::pick(), MRMTransitionGroupPicker::pickTransitionGroup(), NucleicAcidSearchEngine::postProcessHits_(), NucleicAcidSearchEngine::preprocessSpectra_(), MRMTransitionGroupPicker::recalculatePeakBorders_(), MRMTransitionGroupPicker::remove_overlapping_features(), ConfidenceScoring::scoreMap(), and TOPPASBase::TOPPASreadyRead().

OPENMS_LOG_DEBUG_NOFILE

#define OPENMS_LOG_DEBUG_NOFILE

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_debug

Macro for general debugging information (without information on file)

OPENMS_LOG_ERROR

#define OPENMS_LOG_ERROR

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_error

Macro to be used if non-fatal error are reported (processing continues)

Referenced by TOPPASBase::addTOPPASFile(), extractCachedMetaFilename(), DecoyHelper::findDecoyString(), TOPPOpenSwathBase::loadSwathFiles(), TOPPOpenSwathBase::loadTransitionList(), main(), NucleicAcidSearchEngine::main_(), QApplicationTOPP::notify(), INIFileEditorWindow::openFile(), DigestionEnzymeDB< DigestionEnzymeRNA, RNaseDB >::parseEnzyme_(), and NucleicAcidSearchEngine::preprocessSpectra_().

OPENMS_LOG_FATAL_ERROR

#define OPENMS_LOG_FATAL_ERROR

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_fatal << __FILE__ << "(" << __LINE__ << "): "

Macro to be used if fatal error are reported (processing stops)

OPENMS_LOG_INFO

#define OPENMS_LOG_INFO

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_info

Macro if a information, e.g. a status should be reported.

Referenced by TOPPViewBase::addDataFile(), NucleicAcidSearchEngine::calculateAndFilterFDR_(), IDScoreSwitcherAlgorithm::findScoreType(), main(), TOPPFLASHDeconv::main_(), NucleicAcidSearchEngine::main_(), SpectraMerger::mergeSpectra_(), NucleicAcidSearchEngine::preprocessSpectra_(), and AccurateMassSearchEngine::resolveAutoMode_().

OPENMS_LOG_WARN

#define OPENMS_LOG_WARN

Value:

OPENMS_THREAD_CRITICAL(LOGSTREAM) \
  OpenMS_Log_warn

Macro if a warning, a piece of information which should be read by the user, should be logged.

Referenced by TOPPViewBase::addDataFile(), SignalToNoiseEstimatorMedian< ContainerT >::computeSTN_(), ChromatogramTools::convertSpectraToChromatograms(), DecoyHelper::findDecoyString(), IDScoreSwitcherAlgorithm::findScoreType(), PeakIntegrator::integratePeak_(), TOPPOpenSwathBase::loadSwathFiles(), NucleicAcidSearchEngine::main_(), OpenMS::makePeakPositionUnique(), SpectraMerger::mergeSpectra_(), SpectraMerger::mergeSpectraPrecursors(), IDFilter::DigestionFilter::operator()(), IsInIsolationWindow< SpectrumType >::operator()(), NucleicAcidSearchEngine::preprocessSpectra_(), InternalCalibration::CalibrantStats_::print(), SpectrumLookup::readSpectra(), ConfidenceScoring::scoreMap(), and IDScoreSwitcherAlgorithm::switchToGeneralScoreType().