struct for TopPIC identification (both PrSMs and proteoforms) More...

#include <OpenMS/ANALYSIS/TOPDOWN/FLASHDeconvHelperStructs.h>

Collaboration diagram for FLASHDeconvHelperStructs::TopPicItem:

Public Member Functions
	TopPicItem ()=default

	TopPicItem (String in)

bool	operator< (const TopPicItem &a) const
	scan numbers are compared More...

bool	operator> (const TopPicItem &a) const

bool	operator== (const TopPicItem &other) const

Public Attributes
String	str
	the line string More...

int	prsm_id
	information from each column More...

int	spec_id

int	scan

double	rt

int	peak_count

int	charge

double	precursor_mass

double	adj_precursor_mass

int	proteform_id = -1

String	protein_acc = ""

int	first_residue

int	last_residue

std::vector< double >	unexp_mod

int	matched_peaks

int	matched_frags

double	e_value

double	spec_q_value

double	proteofrom_q_value

double	intensity

Detailed Description

struct for TopPIC identification (both PrSMs and proteoforms)

Constructor & Destructor Documentation

◆ TopPicItem() [1/2]

TopPicItem ( )

default

◆ TopPicItem() [2/2]

TopPicItem ( String in )

explicit

parse a single line of TopPIC output. Header includes: Data file name Prsm ID Spectrum ID Fragmentation Scan(s) Retention time #peaks Charge Precursor mass Adjusted precursor mass Proteoform ID Feature intensity Feature score Protein accession Protein description First residue Last residue Proteoform #unexpected modifications MIScore #variable PTMs #matched peaks #matched fragment ions E-value Spectrum-level Q-value Proteoform-level Q-value

Member Function Documentation

◆ operator<()

bool operator< ( const TopPicItem & a ) const

scan numbers are compared

◆ operator==()

bool operator== ( const TopPicItem & other ) const

◆ operator>()

bool operator> ( const TopPicItem & a ) const

Member Data Documentation

◆ adj_precursor_mass

double adj_precursor_mass

◆ charge

int charge

◆ e_value

double e_value

◆ first_residue

int first_residue

◆ intensity

double intensity

◆ last_residue

int last_residue

◆ matched_frags

int matched_frags

◆ matched_peaks

int matched_peaks

◆ peak_count

int peak_count

◆ precursor_mass

double precursor_mass

◆ proteform_id

int proteform_id = -1

◆ protein_acc

String protein_acc = ""

◆ proteofrom_q_value

double proteofrom_q_value

◆ prsm_id

int prsm_id

information from each column

◆ rt

double rt

◆ scan

int scan

◆ spec_id

int spec_id

◆ spec_q_value

double spec_q_value

◆ str

String str

the line string

◆ unexp_mod

std::vector<double> unexp_mod

Public Member Functions

Public Attributes