#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/METADATA/PeptideIdentification.h>