#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h>
#include <map>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/SYSTEM/File.h>