SimpleSearchEngineAlgorithm.h File Reference

#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/ANALYSIS/ID/PeptideIndexing.h>
#include <OpenMS/ANALYSIS/RNPXL/ModifiedPeptideGenerator.h>
#include <OpenMS/ANALYSIS/RNPXL/HyperScore.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h>
#include <OpenMS/CHEMISTRY/ResidueModification.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/FILTERING/DATAREDUCTION/Deisotoper.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h>
#include <OpenMS/FILTERING/TRANSFORMERS/NLargest.h>
#include <OpenMS/FILTERING/TRANSFORMERS/WindowMower.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/METADATA/SpectrumSettings.h>
#include <map>
#include <algorithm>

Go to the source code of this file.

Classes
class	SimpleSearchEngineAlgorithm
struct	SimpleSearchEngineAlgorithm::AnnotatedHit_
	Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

Namespaces
	OpenMS
	Main OpenMS namespace.

Macros
#define	NUMBER_OF_THREADS   (1)

Macro Definition Documentation

NUMBER_OF_THREADS

#define NUMBER_OF_THREADS   (1)