MSstatsFile Class Reference

File adapter for MzTab files. More...

#include <OpenMS/FORMAT/MSstatsFile.h>

Classes
class	MSstatsLine

Public Member Functions
	MSstatsFile ()
	Default constructor. More...
	~MSstatsFile ()
	Destructor. More...
void	store (const String &filename, ConsensusMap &consensus_map, const ExperimentalDesign &design, const StringList &reannotate_filenames, const bool is_isotope_label_type, const String &bioreplicate, const String &condition, const String &retention_time_summarization_method)

Private Member Functions
bool	checkUnorderedContent_ (const std::vector< String > &first, const std::vector< String > &second)
OpenMS::Peak2D::IntensityType	sumIntensity (const set< OpenMS::Peak2D::IntensityType > &intensities)
OpenMS::Peak2D::IntensityType	meanIntensity (const set< OpenMS::Peak2D::IntensityType > &intensities)

Static Private Member Functions
static void	assembleRunMap (std::map< std::pair< String, unsigned >, unsigned > &run_map, const ExperimentalDesign &design)

Private Attributes
const String	na_string = "NA"
const String	meta_value_exp_design_key = "spectra_data"

Detailed Description

File adapter for MzTab files.

Constructor & Destructor Documentation

MSstatsFile()

MSstatsFile

(

)

Default constructor.

~MSstatsFile()

~MSstatsFile

(

)

Destructor.

Member Function Documentation

assembleRunMap()

static void assembleRunMap ( std::map< std::pair< String, unsigned >, unsigned > &  run_map, const ExperimentalDesign &  design  )

inlinestaticprivate

References File::basename(), and ExperimentalDesign::getMSFileSection().

checkUnorderedContent_()

bool checkUnorderedContent_ ( const std::vector< String > &  first, const std::vector< String > &  second  )

inlineprivate

meanIntensity()

OpenMS::Peak2D::IntensityType meanIntensity ( const set< OpenMS::Peak2D::IntensityType > &  intensities )

inlineprivate

store()

void store	(	const String &	filename,
		ConsensusMap &	consensus_map,
		const ExperimentalDesign &	design,
		const StringList &	reannotate_filenames,
		const bool	is_isotope_label_type,
		const String &	bioreplicate,
		const String &	condition,
		const String &	retention_time_summarization_method
	)

Referenced by UTILProteomicsLFQ::main_().

sumIntensity()

OpenMS::Peak2D::IntensityType sumIntensity ( const set< OpenMS::Peak2D::IntensityType > &  intensities )

inlineprivate

Member Data Documentation

meta_value_exp_design_key

const String meta_value_exp_design_key = "spectra_data"

private

na_string

const String na_string = "NA"

private