PeptideIndexing::FoundProteinFunctor Struct Reference

#include <OpenMS/ANALYSIS/ID/PeptideIndexing.h>

Public Types
typedef std::map< OpenMS::Size, std::set< PeptideProteinMatchInformation > >	MapType

Public Member Functions
	FoundProteinFunctor (const ProteaseDigestion &enzyme)
void	merge (FoundProteinFunctor &other)
void	addHit (const OpenMS::Size idx_pep, const OpenMS::Size idx_prot, const OpenMS::Size len_pep, const OpenMS::String &seq_prot, OpenMS::Int position)

Public Attributes
MapType	pep_to_prot
	peptide index –> protein indices More...
OpenMS::Size	filter_passed
	number of accepted hits (passing addHit() constraints) More...
OpenMS::Size	filter_rejected
	number of rejected hits (not passing addHit()) More...

Private Attributes
ProteaseDigestion	enzyme_

Member Typedef Documentation

MapType

typedef std::map<OpenMS::Size, std::set<PeptideProteinMatchInformation> > MapType

Constructor & Destructor Documentation

FoundProteinFunctor()

FoundProteinFunctor ( const ProteaseDigestion &  enzyme )

inlineexplicit

Member Function Documentation

addHit()

void addHit ( const OpenMS::Size  idx_pep, const OpenMS::Size  idx_prot, const OpenMS::Size  len_pep, const OpenMS::String &  seq_prot, OpenMS::Int  position  )

inline

References PeptideIndexing::PeptideProteinMatchInformation::AAAfter, PeptideIndexing::PeptideProteinMatchInformation::AABefore, PeptideEvidence::C_TERMINAL_AA, ProteaseDigestion::isValidProduct(), PeptideEvidence::N_TERMINAL_AA, seqan::position(), PeptideIndexing::PeptideProteinMatchInformation::position, and PeptideIndexing::PeptideProteinMatchInformation::protein_index.

Referenced by PeptideIndexing::addHits_().

merge()

void merge ( FoundProteinFunctor &  other )

inline

References PeptideIndexing::FoundProteinFunctor::filter_passed, PeptideIndexing::FoundProteinFunctor::filter_rejected, and PeptideIndexing::FoundProteinFunctor::pep_to_prot.

Referenced by PeptideIndexing::run().

Member Data Documentation

enzyme_

ProteaseDigestion enzyme_

private

filter_passed

OpenMS::Size filter_passed

number of accepted hits (passing addHit() constraints)

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().

filter_rejected

OpenMS::Size filter_rejected

number of rejected hits (not passing addHit())

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().

pep_to_prot

MapType pep_to_prot

peptide index –> protein indices

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().