CompleteLinkage.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Mathias Walzer $
// $Authors: $
// --------------------------------------------------------------------------
//
#pragma once
 
#include <OpenMS/ML/CLUSTERING/ClusterFunctor.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DistanceMatrix.h>
#include <cmath>
#include <set>
#include <vector>
 
namespace OpenMS
{
class OPENMS_DLLAPI CompleteLinkage : public ClusterFunctor, public ProgressLogger
{
public:
  CompleteLinkage();
 
  CompleteLinkage(const CompleteLinkage& source);
 
  ~CompleteLinkage() override;
 
  CompleteLinkage& operator=(const CompleteLinkage& source);
 
  void operator()(DistanceMatrix<float>& original_distance, std::vector<BinaryTreeNode>& cluster_tree, const float threshold = 1) const override;
 
};
 
} // namespace OpenMS