OpenMS
3.0.0
Main Page
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Files
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File Members
File List
Here is a list of all files with brief descriptions:
[detail level
1
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3
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5
]
►
doc
►
doxygen
►
install
common-cmake-parameters.doxygen
install-linux.doxygen
install-macs.doxygen
install-win.doxygen
►
public
Changelog.doxygen
coding-conventions.doxygen
cpp-guide.doxygen
developer-faq.doxygen
ExternalCode.doxygen
FAQ.doxygen
how-to-write-tests.doxygen
KnownDevBugs.doxygen
Main.doxygen
Modules.doxygen
OpenMS_Tutorial_html.doxygen
PyOpenMS.doxygen
TOPP.doxygen
UTILS.doxygen
►
OpenMS_tutorial
OpenMS_Tutorial.doxygen
►
GUITOOLS
INIFileEditor.cpp
SwathWizard.cpp
TOPPAS.cpp
TOPPView.cpp
►
MISC
QApplicationTOPP.cpp
►
OpenMS
►
ANALYSIS
►
DECHARGING
FeatureDeconvolution.h
ILPDCWrapper.h
MetaboliteFeatureDeconvolution.h
►
DENOVO
CompNovoIdentification.h
CompNovoIdentificationBase.h
CompNovoIdentificationCID.h
CompNovoIonScoring.h
CompNovoIonScoringBase.h
CompNovoIonScoringCID.h
DeNovoAlgorithm.h
DeNovoIdentification.h
DeNovoIonScoring.h
DeNovoPostScoring.h
►
ID
AccurateMassSearchEngine.h
AhoCorasickAmbiguous.h
AScore.h
BasicProteinInferenceAlgorithm.h
BayesianProteinInferenceAlgorithm.h
ConsensusIDAlgorithm.h
ConsensusIDAlgorithmAverage.h
ConsensusIDAlgorithmBest.h
ConsensusIDAlgorithmIdentity.h
ConsensusIDAlgorithmPEPIons.h
ConsensusIDAlgorithmPEPMatrix.h
ConsensusIDAlgorithmRanks.h
ConsensusIDAlgorithmSimilarity.h
ConsensusIDAlgorithmWorst.h
ConsensusMapMergerAlgorithm.h
FalseDiscoveryRate.h
FIAMSDataProcessor.h
FIAMSScheduler.h
HiddenMarkovModel.h
IDBoostGraph.h
IDConflictResolverAlgorithm.h
IDDecoyProbability.h
IDMapper.h
IDMergerAlgorithm.h
IDRipper.h
IDScoreGetterSetter.h
IDScoreSwitcherAlgorithm.h
IonIdentityMolecularNetworking.h
MessagePasserFactory.h
MetaboliteSpectralMatching.h
PeptideIndexing.h
PeptideProteinResolution.h
PercolatorFeatureSetHelper.h
PrecursorPurity.h
ProtonDistributionModel.h
SimpleSearchEngineAlgorithm.h
SiriusAdapterAlgorithm.h
SiriusMSConverter.h
►
MAPMATCHING
BaseGroupFinder.h
BaseSuperimposer.h
ConsensusMapNormalizerAlgorithmMedian.h
ConsensusMapNormalizerAlgorithmQuantile.h
ConsensusMapNormalizerAlgorithmThreshold.h
FeatureDistance.h
FeatureGroupingAlgorithm.h
FeatureGroupingAlgorithmKD.h
FeatureGroupingAlgorithmLabeled.h
FeatureGroupingAlgorithmQT.h
FeatureGroupingAlgorithmUnlabeled.h
FeatureMapping.h
LabeledPairFinder.h
MapAlignmentAlgorithmIdentification.h
MapAlignmentAlgorithmKD.h
MapAlignmentAlgorithmPoseClustering.h
MapAlignmentAlgorithmSpectrumAlignment.h
MapAlignmentAlgorithmTreeGuided.h
MapAlignmentEvaluationAlgorithm.h
MapAlignmentEvaluationAlgorithmPrecision.h
MapAlignmentEvaluationAlgorithmRecall.h
MapAlignmentTransformer.h
PoseClusteringAffineSuperimposer.h
PoseClusteringShiftSuperimposer.h
QTClusterFinder.h
SimplePairFinder.h
StablePairFinder.h
TransformationDescription.h
TransformationModel.h
TransformationModelBSpline.h
TransformationModelInterpolated.h
TransformationModelLinear.h
TransformationModelLowess.h
►
MRM
MRMFragmentSelection.h
ReactionMonitoringTransition.h
►
OPENSWATH
►
DATAACCESS
DataAccessHelper.h
MRMFeatureAccessOpenMS.h
SimpleOpenMSSpectraAccessFactory.h
SpectrumAccessOpenMS.h
SpectrumAccessOpenMSCached.h
SpectrumAccessOpenMSInMemory.h
SpectrumAccessQuadMZTransforming.h
SpectrumAccessSqMass.h
SpectrumAccessTransforming.h
ChromatogramExtractor.h
ChromatogramExtractorAlgorithm.h
ConfidenceScoring.h
DIAHelper.h
DIAPrescoring.h
DIAScoring.h
IonMobilityScoring.h
MasstraceCorrelator.h
MRMAssay.h
MRMBatchFeatureSelector.h
MRMDecoy.h
MRMFeatureFilter.h
MRMFeatureFinderScoring.h
MRMFeaturePicker.h
MRMFeatureQC.h
MRMFeatureSelector.h
MRMIonSeries.h
MRMRTNormalizer.h
MRMScoring.h
MRMTransitionGroupPicker.h
OpenSwathHelper.h
OpenSwathOSWWriter.h
OpenSwathScores.h
OpenSwathScoring.h
OpenSwathTSVWriter.h
OpenSwathWorkflow.h
PeakIntegrator.h
PeakPickerMRM.h
SONARScoring.h
SpectrumAddition.h
SwathMapMassCorrection.h
SwathQC.h
SwathWindowLoader.h
TargetedSpectraExtractor.h
TransitionPQPFile.h
TransitionTSVFile.h
►
PIP
LocalLinearMap.h
PeakIntensityPredictor.h
►
QUANTITATION
AbsoluteQuantitation.h
AbsoluteQuantitationMethod.h
IsobaricChannelExtractor.h
IsobaricIsotopeCorrector.h
IsobaricNormalizer.h
IsobaricQuantifier.h
IsobaricQuantifierStatistics.h
IsobaricQuantitationMethod.h
IsotopeLabelingMDVs.h
ItraqConstants.h
ItraqEightPlexQuantitationMethod.h
ItraqFourPlexQuantitationMethod.h
KDTreeFeatureMaps.h
KDTreeFeatureNode.h
PeptideAndProteinQuant.h
ProteinInference.h
ProteinResolver.h
QuantitativeExperimentalDesign.h
TMTEighteenPlexQuantitationMethod.h
TMTElevenPlexQuantitationMethod.h
TMTSixPlexQuantitationMethod.h
TMTSixteenPlexQuantitationMethod.h
TMTTenPlexQuantitationMethod.h
►
RNPXL
HyperScore.h
MorpheusScore.h
PScore.h
RNPxlFragmentAnnotationHelper.h
RNPxlMarkerIonExtractor.h
RNPxlModificationsGenerator.h
RNPxlReport.h
►
SEQUENCE
NeedlemanWunsch.h
►
SVM
SimpleSVM.h
SVMWrapper.h
►
TARGETED
IncludeExcludeTarget.h
InclusionExclusionList.h
MetaboTargetedAssay.h
MetaboTargetedTargetDecoy.h
MRMMapping.h
OfflinePrecursorIonSelection.h
PrecursorIonSelection.h
PrecursorIonSelectionPreprocessing.h
PSLPFormulation.h
PSProteinInference.h
TargetedExperiment.h
TargetedExperimentHelper.h
►
TOPDOWN
DeconvolvedSpectrum.h
FLASHDeconvAlgorithm.h
FLASHDeconvHelperStructs.h
MassFeatureTrace.h
PeakGroup.h
QScore.h
►
XLMS
OpenPepXLAlgorithm.h
OpenPepXLLFAlgorithm.h
OPXLDataStructs.h
OPXLHelper.h
OPXLSpectrumProcessingAlgorithms.h
XFDRAlgorithm.h
XQuestScores.h
►
APPLICATIONS
ConsoleUtils.h
INIUpdater.h
MapAlignerBase.h
OpenSwathBase.h
ParameterInformation.h
SearchEngineBase.h
ToolHandler.h
TOPPBase.h
►
CHEMISTRY
►
ISOTOPEDISTRIBUTION
CoarseIsotopePatternGenerator.h
FineIsotopePatternGenerator.h
IsoSpecWrapper.h
IsotopeDistribution.h
IsotopePatternGenerator.h
►
MASSDECOMPOSITION
►
IMS
IMSAlphabet.h
IMSAlphabetParser.h
IMSAlphabetTextParser.h
IMSElement.h
IMSIsotopeDistribution.h
IntegerMassDecomposer.h
MassDecomposer.h
RealMassDecomposer.h
Weights.h
MassDecomposition.h
MassDecompositionAlgorithm.h
AAIndex.h
AASequence.h
AdductInfo.h
CrossLinksDB.h
DecoyGenerator.h
DigestionEnzyme.h
DigestionEnzymeDB.h
DigestionEnzymeProtein.h
DigestionEnzymeRNA.h
Element.h
ElementDB.h
EmpiricalFormula.h
EnzymaticDigestion.h
EnzymaticDigestionLogModel.h
ModificationDefinition.h
ModificationDefinitionsSet.h
ModificationsDB.h
ModifiedNASequenceGenerator.h
ModifiedPeptideGenerator.h
NASequence.h
NucleicAcidSpectrumGenerator.h
ProteaseDB.h
ProteaseDigestion.h
Residue.h
ResidueDB.h
ResidueModification.h
Ribonucleotide.h
RibonucleotideDB.h
RNaseDB.h
RNaseDigestion.h
SimpleTSGXLMS.h
SpectrumAnnotator.h
SvmTheoreticalSpectrumGenerator.h
SvmTheoreticalSpectrumGeneratorSet.h
SvmTheoreticalSpectrumGeneratorTrainer.h
Tagger.h
TheoreticalSpectrumGenerator.h
TheoreticalSpectrumGeneratorXLMS.h
WeightWrapper.h
►
COMPARISON
►
CLUSTERING
AverageLinkage.h
ClusterAnalyzer.h
ClusterFunctor.h
ClusterHierarchical.h
ClusteringGrid.h
CompleteLinkage.h
EuclideanSimilarity.h
GridBasedCluster.h
GridBasedClustering.h
HashGrid.h
SingleLinkage.h
►
SPECTRA
BinnedSharedPeakCount.h
BinnedSpectralContrastAngle.h
BinnedSpectrum.h
BinnedSpectrumCompareFunctor.h
BinnedSumAgreeingIntensities.h
PeakAlignment.h
PeakSpectrumCompareFunctor.h
SpectraSTSimilarityScore.h
SpectrumAlignment.h
SpectrumAlignmentScore.h
SpectrumCheapDPCorr.h
SpectrumPrecursorComparator.h
SteinScottImproveScore.h
ZhangSimilarityScore.h
►
CONCEPT
ClassTest.h
Colorizer.h
CommonEnums.h
Constants.h
EnumHelpers.h
Exception.h
Factory.h
FactoryBase.h
FuzzyStringComparator.h
GlobalExceptionHandler.h
Helpers.h
Init.h
LogConfigHandler.h
LogStream.h
openms/include/OpenMS/CONCEPT/Macros.h
MacrosTest.h
PrecisionWrapper.h
ProgressLogger.h
RAIICleanup.h
SingletonRegistry.h
StreamHandler.h
TypeAsString.h
Types.h
UniqueIdGenerator.h
UniqueIdIndexer.h
UniqueIdInterface.h
VersionInfo.h
►
DATASTRUCTURES
►
Utils
MapUtilities.h
MatrixUtils.h
Adduct.h
BinaryTreeNode.h
CalibrationData.h
ChargePair.h
Compomer.h
ConstRefVector.h
ConvexHull2D.h
CVMappingRule.h
CVMappings.h
CVMappingTerm.h
CVReference.h
DataValue.h
Date.h
DateTime.h
DBoundingBox.h
DefaultParamHandler.h
DIntervalBase.h
DistanceMatrix.h
DPosition.h
DRange.h
FASTAContainer.h
FlagSet.h
GridFeature.h
IsotopeCluster.h
KDTree.h
ListUtils.h
ListUtilsIO.h
LPWrapper.h
MassExplainer.h
MatchedIterator.h
Matrix.h
OSWData.h
Param.h
ParamValue.h
QTCluster.h
String.h
StringConversions.h
StringListUtils.h
StringUtils.h
StringUtilsSimple.h
StringView.h
ToolDescription.h
►
FILTERING
►
BASELINE
MorphologicalFilter.h
►
CALIBRATION
InternalCalibration.h
MZTrafoModel.h
PrecursorCorrection.h
TOFCalibration.h
►
DATAREDUCTION
DataFilters.h
Deisotoper.h
ElutionPeakDetection.h
FeatureFindingMetabo.h
FeatureOverlapFilter.h
IsotopeDistributionCache.h
MassTraceDetection.h
SplineInterpolatedPeaks.h
SplinePackage.h
►
ID
IDFilter.h
►
NOISEESTIMATION
SignalToNoiseEstimator.h
SignalToNoiseEstimatorMeanIterative.h
SignalToNoiseEstimatorMedian.h
SignalToNoiseEstimatorMedianRapid.h
►
SMOOTHING
FastLowessSmoothing.h
GaussFilter.h
GaussFilterAlgorithm.h
LowessSmoothing.h
SavitzkyGolayFilter.h
►
TRANSFORMERS
BernNorm.h
ComplementFilter.h
ComplementMarker.h
FilterFunctor.h
GoodDiffFilter.h
IntensityBalanceFilter.h
IsotopeDiffFilter.h
IsotopeMarker.h
LinearResampler.h
LinearResamplerAlign.h
MarkerMower.h
NeutralLossDiffFilter.h
NeutralLossMarker.h
NLargest.h
Normalizer.h
ParentPeakMower.h
PeakMarker.h
Scaler.h
SpectraMerger.h
SqrtMower.h
ThresholdMower.h
TICFilter.h
WindowMower.h
►
FORMAT
►
DATAACCESS
CsiFingerIdMzTabWriter.h
MSDataAggregatingConsumer.h
MSDataCachedConsumer.h
MSDataChainingConsumer.h
MSDataSqlConsumer.h
MSDataStoringConsumer.h
MSDataTransformingConsumer.h
MSDataWritingConsumer.h
NoopMSDataConsumer.h
SiriusFragmentAnnotation.h
SiriusMzTabWriter.h
SwathFileConsumer.h
►
HANDLERS
AcqusHandler.h
CachedMzMLHandler.h
ConsensusXMLHandler.h
FeatureXMLHandler.h
FidHandler.h
IndexedMzMLDecoder.h
IndexedMzMLHandler.h
MascotXMLHandler.h
MzDataHandler.h
MzIdentMLDOMHandler.h
MzIdentMLHandler.h
MzMLHandler.h
MzMLHandlerHelper.h
MzMLSpectrumDecoder.h
MzMLSqliteHandler.h
MzMLSqliteSwathHandler.h
MzQuantMLHandler.h
MzXMLHandler.h
ParamXMLHandler.h
PTMXMLHandler.h
ToolDescriptionHandler.h
TraMLHandler.h
UnimodXMLHandler.h
XMLHandler.h
XQuestResultXMLHandler.h
►
OPTIONS
FeatureFileOptions.h
PeakFileOptions.h
►
VALIDATORS
MzDataValidator.h
MzIdentMLValidator.h
MzMLValidator.h
MzQuantMLValidator.h
SemanticValidator.h
TraMLValidator.h
XMLValidator.h
AbsoluteQuantitationMethodFile.h
AbsoluteQuantitationStandardsFile.h
Base64.h
Bzip2Ifstream.h
Bzip2InputStream.h
CachedMzML.h
ChromeleonFile.h
CompressedInputSource.h
ConsensusXMLFile.h
ControlledVocabulary.h
CsvFile.h
CVMappingFile.h
DTA2DFile.h
DTAFile.h
EDTAFile.h
ExperimentalDesignFile.h
FASTAFile.h
FeatureXMLFile.h
FileHandler.h
FileTypes.h
FLASHDeconvFeatureFile.h
FLASHDeconvSpectrumFile.h
GNPSMetaValueFile.h
GNPSMGFFile.h
GNPSQuantificationFile.h
GzipIfstream.h
GzipInputStream.h
HDF5Connector.h
IBSpectraFile.h
IdXMLFile.h
IndentedStream.h
IndexedMzMLFileLoader.h
InspectInfile.h
InspectOutfile.h
KroenikFile.h
LibSVMEncoder.h
MascotGenericFile.h
MascotInfile.h
MascotRemoteQuery.h
MascotXMLFile.h
MRMFeaturePickerFile.h
MRMFeatureQCFile.h
MS2File.h
MsInspectFile.h
MSNumpressCoder.h
MSPFile.h
MSPGenericFile.h
MSstatsFile.h
MzDataFile.h
MzIdentMLFile.h
MzMLFile.h
MzQCFile.h
MzQuantMLFile.h
MzTab.h
MzTabBase.h
MzTabFile.h
MzTabM.h
MzTabMFile.h
MzXMLFile.h
OMSFile.h
OMSFileLoad.h
OMSFileStore.h
OMSSACSVFile.h
OMSSAXMLFile.h
OSWFile.h
ParamCTDFile.h
ParamXMLFile.h
PeakTypeEstimator.h
PepNovoInfile.h
PepNovoOutfile.h
PepXMLFile.h
PepXMLFileMascot.h
PercolatorInfile.h
PercolatorOutfile.h
ProtXMLFile.h
PTMXMLFile.h
QcMLFile.h
SequestInfile.h
SequestOutfile.h
SpecArrayFile.h
SqliteConnector.h
SqMassFile.h
SVOutStream.h
SwathFile.h
TextFile.h
ToolDescriptionFile.h
TraMLFile.h
TransformationXMLFile.h
TriqlerFile.h
UnimodXMLFile.h
XMassFile.h
XMLFile.h
XQuestResultXMLFile.h
XTandemInfile.h
XTandemXMLFile.h
ZlibCompression.h
►
INTERFACES
openms/include/OpenMS/INTERFACES/DataStructures.h
IMSDataConsumer.h
openms/include/OpenMS/INTERFACES/ISpectrumAccess.h
►
IONMOBILITY
FAIMSHelper.h
IMDataConverter.h
IMTypes.h
►
KERNEL
AreaIterator.h
BaseFeature.h
ChromatogramPeak.h
ChromatogramTools.h
ConsensusFeature.h
ConsensusMap.h
ConversionHelper.h
DimMapper.h
DPeak.h
Feature.h
FeatureHandle.h
FeatureMap.h
MassTrace.h
MobilityPeak1D.h
MobilityPeak2D.h
Mobilogram.h
MRMFeature.h
MRMTransitionGroup.h
MSChromatogram.h
MSExperiment.h
MSSpectrum.h
OnDiscMSExperiment.h
Peak1D.h
Peak2D.h
PeakIndex.h
RangeManager.h
RangeUtils.h
RichPeak2D.h
SpectrumHelper.h
StandardDeclarations.h
StandardTypes.h
►
MATH
►
MISC
►
NNLS
NNLS.h
BilinearInterpolation.h
BSpline2d.h
CubicSpline2d.h
EmgGradientDescent.h
GridSearch.h
LinearInterpolation.h
MathFunctions.h
MSNumpress.h
NonNegativeLeastSquaresSolver.h
RANSAC.h
RANSACModel.h
RANSACModelLinear.h
RANSACModelQuadratic.h
SplineBisection.h
►
STATISTICS
AsymmetricStatistics.h
AveragePosition.h
BasicStatistics.h
GammaDistributionFitter.h
GaussFitter.h
GumbelDistributionFitter.h
GumbelMaxLikelihoodFitter.h
Histogram.h
LinearRegression.h
LinearRegressionWithoutIntercept.h
PosteriorErrorProbabilityModel.h
QuadraticRegression.h
ROCCurve.h
StatisticFunctions.h
►
METADATA
►
ID
AppliedProcessingStep.h
DBSearchParam.h
IdentificationData.h
IdentificationDataConverter.h
IdentifiedCompound.h
IdentifiedMolecule.h
IdentifiedSequence.h
include/OpenMS/METADATA/ID/InputFile.h
MetaData.h
Observation.h
ObservationMatch.h
ObservationMatchGroup.h
ParentGroup.h
ParentMatch.h
ParentSequence.h
ProcessingSoftware.h
ProcessingStep.h
ScoredProcessingResult.h
ScoreType.h
AbsoluteQuantitationStandards.h
Acquisition.h
AcquisitionInfo.h
ChromatogramSettings.h
ContactPerson.h
CVTerm.h
CVTermList.h
CVTermListInterface.h
DataArrays.h
DataProcessing.h
Digestion.h
DocumentIdentifier.h
DocumentIDTagger.h
ExperimentalDesign.h
ExperimentalSettings.h
Gradient.h
HPLC.h
Identification.h
IdentificationHit.h
Instrument.h
InstrumentSettings.h
IonDetector.h
IonSource.h
MassAnalyzer.h
MetaInfo.h
MetaInfoDescription.h
MetaInfoInterface.h
MetaInfoInterfaceUtils.h
MetaInfoRegistry.h
Modification.h
MSQuantifications.h
PeptideEvidence.h
PeptideHit.h
PeptideIdentification.h
Precursor.h
Product.h
ProteinHit.h
ProteinIdentification.h
Sample.h
SampleTreatment.h
ScanWindow.h
Software.h
SourceFile.h
SpectrumIdentification.h
SpectrumLookup.h
SpectrumMetaDataLookup.h
SpectrumSettings.h
Tagging.h
►
QC
Contaminants.h
DBSuitability.h
FeatureSummary.h
FragmentMassError.h
FWHM.h
IdentificationSummary.h
MissedCleavages.h
MQEvidenceExporter.h
MQExporterHelper.h
MQMsmsExporter.h
Ms2IdentificationRate.h
Ms2SpectrumStats.h
MzCalibration.h
PeptideMass.h
PSMExplainedIonCurrent.h
QCBase.h
RTAlignment.h
SpectrumCount.h
TIC.h
►
SIMULATION
►
LABELING
BaseLabeler.h
BaseLabeler_impl.h
ICPLLabeler.h
ITRAQLabeler.h
LabelFreeLabeler.h
O18Labeler.h
SILACLabeler.h
DetectabilitySimulation.h
DigestSimulation.h
EGHFitter1D.h
EGHModel.h
IonizationSimulation.h
MSSim.h
RawMSSignalSimulation.h
RawTandemMSSignalSimulation.h
RTSimulation.h
SimTypes.h
►
SYSTEM
BuildInfo.h
ExternalProcess.h
File.h
FileWatcher.h
JavaInfo.h
NetworkGetRequest.h
PythonInfo.h
RWrapper.h
StopWatch.h
SysInfo.h
UpdateCheck.h
►
TRANSFORMATIONS
►
FEATUREFINDER
BaseModel.h
BaseModel_impl.h
BiGaussFitter1D.h
BiGaussModel.h
EGHTraceFitter.h
ElutionModelFitter.h
EmgFitter1D.h
EmgModel.h
EmgScoring.h
ExtendedIsotopeFitter1D.h
ExtendedIsotopeModel.h
FeatureFinder.h
FeatureFinderAlgorithm.h
FeatureFinderAlgorithmIsotopeWavelet.h
FeatureFinderAlgorithmMetaboIdent.h
FeatureFinderAlgorithmMRM.h
FeatureFinderAlgorithmPicked.h
FeatureFinderAlgorithmPickedHelperStructs.h
FeatureFinderDefs.h
FeatureFinderIdentificationAlgorithm.h
FeatureFinderMultiplexAlgorithm.h
Fitter1D.h
GaussFitter1D.h
GaussModel.h
GaussTraceFitter.h
InterpolationModel.h
IsotopeFitter1D.h
IsotopeModel.h
IsotopeWavelet.h
IsotopeWaveletConstants.h
IsotopeWaveletTransform.h
LevMarqFitter1D.h
MaxLikeliFitter1D.h
ModelDescription.h
MultiplexClustering.h
MultiplexDeltaMasses.h
MultiplexDeltaMassesGenerator.h
MultiplexFilteredMSExperiment.h
MultiplexFilteredPeak.h
MultiplexFiltering.h
MultiplexFilteringCentroided.h
MultiplexFilteringProfile.h
MultiplexIsotopicPeakPattern.h
MultiplexSatelliteCentroided.h
MultiplexSatelliteProfile.h
PeakWidthEstimator.h
ProductModel.h
SeedListGenerator.h
TraceFitter.h
►
RAW2PEAK
ContinuousWaveletTransform.h
ContinuousWaveletTransformNumIntegration.h
OptimizePeakDeconvolution.h
OptimizePick.h
PeakPickerCWT.h
PeakPickerHiRes.h
PeakPickerIterative.h
PeakPickerMaxima.h
PeakPickerSH.h
PeakShape.h
TwoDOptimization.h
►
OpenMS
►
VISUAL
►
ANNOTATION
Annotation1DCaret.h
Annotation1DDistanceItem.h
Annotation1DItem.h
Annotation1DPeakItem.h
Annotation1DTextItem.h
Annotation1DVerticalLineItem.h
Annotations1DContainer.h
►
APPLICATIONS
►
MISC
QApplicationTOPP.h
INIFileEditorWindow.h
SwathWizardBase.h
TOPPASBase.h
TOPPViewBase.h
►
DIALOGS
DataFilterDialog.h
FeatureEditDialog.h
HistogramDialog.h
LayerStatisticsDialog.h
ListFilterDialog.h
Plot1DGoToDialog.h
Plot1DPrefDialog.h
Plot2DGoToDialog.h
Plot2DPrefDialog.h
Plot3DPrefDialog.h
PythonModuleRequirement.h
PythonSelector.h
SaveImageDialog.h
SpectrumAlignmentDialog.h
SwathTabWidget.h
TheoreticalSpectrumGenerationDialog.h
ToolsDialog.h
TOPPASInputFileDialog.h
TOPPASInputFilesDialog.h
TOPPASIOMappingDialog.h
TOPPASOutputFilesDialog.h
TOPPASToolConfigDialog.h
TOPPASVertexNameDialog.h
TOPPViewOpenDialog.h
TOPPViewPrefDialog.h
WizardHelper.h
►
INTERFACES
IPeptideIds.h
►
MISC
CommonDefs.h
ExternalProcessMBox.h
FilterableList.h
GUIHelpers.h
►
VISITORS
LayerStatistics.h
LayerStoreData.h
►
VISUALIZER
AcquisitionInfoVisualizer.h
AcquisitionVisualizer.h
BaseVisualizer.h
BaseVisualizerGUI.h
ContactPersonVisualizer.h
DataProcessingVisualizer.h
DigestionVisualizer.h
DocumentIdentifierVisualizer.h
ExperimentalSettingsVisualizer.h
GradientVisualizer.h
HPLCVisualizer.h
InstrumentSettingsVisualizer.h
InstrumentVisualizer.h
IonDetectorVisualizer.h
IonSourceVisualizer.h
MassAnalyzerVisualizer.h
MetaInfoDescriptionVisualizer.h
MetaInfoVisualizer.h
ModificationVisualizer.h
PeptideHitVisualizer.h
PeptideIdentificationVisualizer.h
PrecursorVisualizer.h
ProductVisualizer.h
ProteinHitVisualizer.h
ProteinIdentificationVisualizer.h
SampleVisualizer.h
ScanWindowVisualizer.h
SoftwareVisualizer.h
SourceFileVisualizer.h
SpectrumSettingsVisualizer.h
TaggingVisualizer.h
AxisPainter.h
AxisTickCalculator.h
AxisWidget.h
ColorSelector.h
DataSelectionTabs.h
DIATreeTab.h
EnhancedTabBar.h
EnhancedTabBarWidgetInterface.h
EnhancedWorkspace.h
FilterList.h
GUIProgressLoggerImpl.h
HistogramWidget.h
gui/include/OpenMS/VISUAL/InputFile.h
InputFileList.h
LayerData1DBase.h
LayerData1DChrom.h
LayerData1DIonMobility.h
LayerData1DPeak.h
LayerDataBase.h
LayerDataChrom.h
LayerDataConsensus.h
LayerDataFeature.h
LayerDataIdent.h
LayerDataIonMobility.h
LayerDataPeak.h
LayerListView.h
ListEditor.h
LogWindow.h
MetaDataBrowser.h
MultiGradient.h
MultiGradientSelector.h
OutputDirectory.h
Painter1DBase.h
Painter2DBase.h
PainterBase.h
ParamEditor.h
Plot1DCanvas.h
Plot1DWidget.h
Plot2DCanvas.h
Plot2DWidget.h
Plot3DCanvas.h
Plot3DOpenGLCanvas.h
Plot3DWidget.h
PlotCanvas.h
PlotWidget.h
RecentFilesMenu.h
SequenceVisualizer.h
SpectraIDViewTab.h
SpectraTreeTab.h
SwathLibraryStats.h
TableView.h
TOPPASEdge.h
TOPPASInputFileListVertex.h
TOPPASMergerVertex.h
TOPPASOutputFileListVertex.h
TOPPASResource.h
TOPPASResources.h
TOPPASScene.h
TOPPASSplitterVertex.h
TOPPASToolVertex.h
TOPPASTreeView.h
TOPPASVertex.h
TOPPASWidget.h
TOPPViewMenu.h
TreeView.h
TVControllerBase.h
TVDIATreeTabController.h
TVIdentificationViewController.h
TVSpectraViewController.h
TVToolDiscovery.h
►
OpenMS
►
OPENSWATHALGO
►
ALGO
Scoring.h
StatsHelpers.h
►
DATAACCESS
DataFrameWriter.h
openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h
openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h
ITransition.h
MockObjects.h
SpectrumHelpers.h
SwathMap.h
TransitionExperiment.h
TransitionHelper.h
Transitions.h
openswathalgo/include/OpenMS/OPENSWATHALGO/Macros.h
INIFileEditorWindow.cpp
SwathWizardBase.cpp
TOPPASBase.cpp
TOPPViewBase.cpp
BaselineFilter.cpp
CometAdapter.cpp
CompNovo.cpp
CompNovoCID.cpp
ConsensusID.cpp
ConsensusMapNormalizer.cpp
DatabaseSuitability.cpp
Decharger.cpp
DTAExtractor.cpp
EICExtractor.cpp
ExecutePipeline.cpp
ExternalCalibration.cpp
FalseDiscoveryRate.cpp
FeatureFinderCentroided.cpp
FeatureFinderIdentification.cpp
FeatureFinderIsotopeWavelet.cpp
FeatureFinderMetabo.cpp
FeatureFinderMRM.cpp
FeatureFinderMultiplex.cpp
FeatureLinkerBase.cpp
FeatureLinkerLabeled.cpp
FeatureLinkerUnlabeled.cpp
FeatureLinkerUnlabeledKD.cpp
FeatureLinkerUnlabeledQT.cpp
FidoAdapter.cpp
FileConverter.cpp
FileFilter.cpp
FileInfo.cpp
FileMerger.cpp
FLASHDeconv.cpp
GenericWrapper.cpp
GNPSExport.cpp
HighResPrecursorMassCorrector.cpp
IDConflictResolver.cpp
IDFileConverter.cpp
IDFilter.cpp
IDMapper.cpp
IDMerger.cpp
IDPosteriorErrorProbability.cpp
IDRipper.cpp
IDRTCalibration.cpp
InclusionExclusionListCreator.cpp
InternalCalibration.cpp
IsobaricAnalyzer.cpp
LuciphorAdapter.cpp
MapAlignerIdentification.cpp
MapAlignerPoseClustering.cpp
MapAlignerSpectrum.cpp
MapAlignerTreeGuided.cpp
MapNormalizer.cpp
MapRTTransformer.cpp
MapStatistics.cpp
MaRaClusterAdapter.cpp
MascotAdapter.cpp
MascotAdapterOnline.cpp
MassTraceExtractor.cpp
MRMMapper.cpp
MSGFPlusAdapter.cpp
MzTabExporter.cpp
NoiseFilterGaussian.cpp
NoiseFilterSGolay.cpp
OpenPepXL.cpp
OpenPepXLLF.cpp
OpenSwathAnalyzer.cpp
OpenSwathAssayGenerator.cpp
OpenSwathChromatogramExtractor.cpp
OpenSwathConfidenceScoring.cpp
OpenSwathDecoyGenerator.cpp
OpenSwathFeatureXMLToTSV.cpp
OpenSwathRTNormalizer.cpp
PeakPickerHiRes.cpp
PeakPickerWavelet.cpp
PepNovoAdapter.cpp
PeptideIndexer.cpp
PercolatorAdapter.cpp
PhosphoScoring.cpp
PrecursorIonSelector.cpp
PrecursorMassCorrector.cpp
ProteinInference.cpp
ProteinQuantifier.cpp
ProteinResolver.cpp
PTModel.cpp
PTPredict.cpp
QualityControl.cpp
Resampler.cpp
RTModel.cpp
RTPredict.cpp
SeedListGenerator.cpp
SpecLibSearcher.cpp
SpectraFilterBernNorm.cpp
SpectraFilterMarkerMower.cpp
SpectraFilterNLargest.cpp
SpectraFilterNormalizer.cpp
SpectraFilterParentPeakMower.cpp
SpectraFilterScaler.cpp
SpectraFilterSqrtMower.cpp
SpectraFilterThresholdMower.cpp
SpectraFilterWindowMower.cpp
SpectraMerger.cpp
TextExporter.cpp
TOFCalibration.cpp
XFDR.cpp
XTandemAdapter.cpp
AccurateMassSearch.cpp
AssayGeneratorMetabo.cpp
ClusterMassTraces.cpp
ClusterMassTracesByPrecursor.cpp
CVInspector.cpp
DatabaseFilter.cpp
DecoyDatabase.cpp
DeMeanderize.cpp
Digestor.cpp
DigestorMotif.cpp
Epifany.cpp
ERPairFinder.cpp
FeatureFinderMetaboIdent.cpp
FFEval.cpp
FuzzyDiff.cpp
IDDecoyProbability.cpp
IDExtractor.cpp
IDMassAccuracy.cpp
IDScoreSwitcher.cpp
IDSplitter.cpp
ImageCreator.cpp
INIUpdater.cpp
JSONExporter.cpp
LabeledEval.cpp
MassCalculator.cpp
MetaboliteAdductDecharger.cpp
MetaboliteSpectralMatcher.cpp
MetaProSIP.cpp
MRMPairFinder.cpp
MRMTransitionGroupPicker.cpp
MSFraggerAdapter.cpp
MSSimulator.cpp
MSstatsConverter.cpp
MultiplexResolver.cpp
MzMLSplitter.cpp
NovorAdapter.cpp
NucleicAcidSearchEngine.cpp
OpenMSDatabasesInfo.cpp
OpenMSInfo.cpp
OpenSwathDIAPreScoring.cpp
OpenSwathFileSplitter.cpp
OpenSwathMzMLFileCacher.cpp
OpenSwathRewriteToFeatureXML.cpp
OpenSwathWorkflow.cpp
PeakPickerIterative.cpp
ProteomicsLFQ.cpp
PSMFeatureExtractor.cpp
QCCalculator.cpp
QCEmbedder.cpp
QCExporter.cpp
QCExtractor.cpp
QCImporter.cpp
QCMerger.cpp
QCShrinker.cpp
RNADigestor.cpp
RNAMassCalculator.cpp
RNPxlSearch.cpp
RNPxlXICFilter.cpp
RTEvaluation.cpp
SemanticValidator.cpp
SequenceCoverageCalculator.cpp
SimpleSearchEngine.cpp
SiriusAdapter.cpp
SpecLibCreator.cpp
SpectraSTSearchAdapter.cpp
StaticModification.cpp
SvmTheoreticalSpectrumGeneratorTrainer.cpp
TargetedFileConverter.cpp
TICCalculator.cpp
TransformationEvaluation.cpp
TriqlerConverter.cpp
XMLValidator.cpp
Generated on Fri Feb 3 2023 01:39:21 for OpenMS by
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