MissedCleavages.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Swenja Wagner, Patricia Scheil $
// --------------------------------------------------------------------------
 
 
#pragma once
 
#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/QC/QCBase.h>
#include <map>
#include <vector>
namespace OpenMS
{
  class FeatureMap;
  class OPENMS_DLLAPI MissedCleavages : public QCBase
  {
  private:
    typedef std::map<UInt32, UInt32> MapU32;
    void get_missed_cleavages_from_peptide_identification_(const ProteaseDigestion& digestor, MapU32& result, const UInt32& max_mc, PeptideIdentification& pep_id);
 
  public:
    MissedCleavages() = default;
 
    virtual ~MissedCleavages() = default;
 
    void compute(FeatureMap& fmap);
    void compute(std::vector<ProteinIdentification>& prot_ids, PeptideIdentificationList& pep_ids);
 
    const String& getName() const override;
 
    const std::vector<std::map<UInt32, UInt32>>& getResults() const;
 
    QCBase::Status requirements() const override;
 
  private:
    std::vector<std::map<UInt32, UInt32>> mc_result_;
  };
} // namespace OpenMS