ProteinInference.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/KERNEL/Peak2D.h>
 
#include <vector>
 
namespace OpenMS
{
 
  class PeptideHit;
  class ConsensusMap;
 
  class OPENMS_DLLAPI ProteinInference
  {
 
public:
 
    typedef Peak2D::IntensityType IntensityType;
 
    ProteinInference();
 
    ProteinInference(const ProteinInference& cp);
 
    ProteinInference& operator=(const ProteinInference& rhs);
 
    void infer(ConsensusMap& consensus_map, const UInt reference_map);
 
 
protected:
 
    void infer_(ConsensusMap& consensus_map,
                const size_t protein_idenfication_index,
                const UInt reference_map);
 
    bool sortByUnique_(std::vector<PeptideHit>& peptide_hits_local, const bool is_higher_score_better);
 
  }; // !class
 
} // !namespace