MzMLSqliteSwathHandler.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CONCEPT/Types.h>
 
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h>
 
// forward declarations
struct sqlite3;
 
namespace OpenMS
{
 
  namespace Internal
  {
 
    class OPENMS_DLLAPI MzMLSqliteSwathHandler
    {
 
public:
 
      MzMLSqliteSwathHandler(const std::string& filename) :
        filename_(filename)
      {}
 
      std::vector<OpenSwath::SwathMap> readSwathWindows();
 
      std::vector<int> readMS1Spectra();
 
      std::vector<int> readSpectraForWindow(const OpenSwath::SwathMap & swath_map);
 
protected:
 
      std::string filename_;
 
      Int spec_id_;
 
      Int chrom_id_;
 
    };
 
 
  }   // namespace Internal
} // namespace OpenMS