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ParentGroup.h
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1// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
2// SPDX-License-Identifier: BSD-3-Clause
3//
4// --------------------------------------------------------------------------
5// $Maintainer: Hendrik Weisser $
6// $Authors: Hendrik Weisser $
7// --------------------------------------------------------------------------
8
9#pragma once
10
12
13#include <boost/multi_index_container.hpp>
14#include <boost/multi_index/ordered_index.hpp>
15#include <boost/multi_index/member.hpp>
16
17namespace OpenMS
18{
19 namespace IdentificationDataInternal
20 {
23 // @TODO: derive from MetaInfoInterface?
25 {
26 std::map<ScoreTypeRef, double> scores;
27 // @TODO: does this need a "leader" or some such?
28 std::set<ParentSequenceRef> parent_refs;
29 };
30
31 typedef boost::multi_index_container<
33 boost::multi_index::indexed_by<
34 boost::multi_index::ordered_unique<
35 boost::multi_index::member<
36 ParentGroup, std::set<ParentSequenceRef>,
40
44 {
45 String label; // @TODO: use "label" as a uniqueness constraint?
47
49 const String& label = "",
52 {
53 }
54 };
55
56 typedef std::vector<ParentGroupSet> ParentGroupSets;
57
58 }
59}
A more convenient string class.
Definition String.h:34
std::map< ScoreTypeRef, double > scores
Definition ParentGroup.h:26
std::vector< ParentGroupSet > ParentGroupSets
Definition ParentGroup.h:56
boost::multi_index_container< ParentGroup, boost::multi_index::indexed_by< boost::multi_index::ordered_unique< boost::multi_index::member< ParentGroup, std::set< ParentSequenceRef >, &ParentGroup::parent_refs > > > > ParentGroups
Definition ParentGroup.h:38
IteratorWrapper< ParentGroups::iterator > ParentGroupRef
Definition ParentGroup.h:39
std::set< ParentSequenceRef > parent_refs
Definition ParentGroup.h:28
: Group of ambiguously identified parent sequences (e.g. protein group)
Definition ParentGroup.h:25
Main OpenMS namespace.
Definition openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19
Wrapper that adds operator< to iterators, so they can be used as (part of) keys in maps/sets or multi...
Definition MetaData.h:20
Set of groups of ambiguously identified parent sequences (e.g. results of running a protein inference...
Definition ParentGroup.h:44
ParentGroups groups
Definition ParentGroup.h:46
String label
Definition ParentGroup.h:45
ParentGroupSet(const String &label="", const ParentGroups &groups=ParentGroups())
Definition ParentGroup.h:48
Base class for ID data with scores and processing steps (and meta info)
Definition ScoredProcessingResult.h:19