MzIdentMLFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Mathias Walzer $
// $Authors: Andreas Bertsch, Mathias Walzer $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
 
#include <vector>
 
namespace OpenMS
{
  class OPENMS_DLLAPI MzIdentMLFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
public:
    MzIdentMLFile();
    ~MzIdentMLFile() override;
 
    void load(const std::string& filename, std::vector<ProteinIdentification>& poid, PeptideIdentificationList& peid);
 
    void store(const std::string& filename, const std::vector<ProteinIdentification>& poid, const PeptideIdentificationList& peid) const;
 
    bool isSemanticallyValid(const std::string& filename, StringList& errors, StringList& warnings);
 
    bool isValid(const std::string& filename, std::ostream& os, std::string& used_version);
 
    std::string detectVersion(const std::string& filename) const;
 
private:
 
  };
 
} // namespace OpenMS