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ProteinGroupArrowExport.h
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1// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
2// SPDX-License-Identifier: BSD-3-Clause
3//
4// --------------------------------------------------------------------------
5// $Maintainer: Timo Sachsenberg $
6// $Authors: Timo Sachsenberg $
7// --------------------------------------------------------------------------
8
9#pragma once
10
11#include <OpenMS/config.h>
12
16
17#include <memory>
18#include <string>
19
20// Forward declarations
21namespace arrow
22{
23 class Table;
24}
25
26namespace OpenMS
27{
28
43class OPENMS_DLLAPI ProteinGroupArrowExport
44{
45public:
55 static std::shared_ptr<arrow::Table> exportToArrow(const ConsensusMap& cmap);
56
65 static bool exportToParquet(
66 const ConsensusMap& cmap,
67 const String& filename,
68 const ParquetWriteConfig& config = ParquetWriteConfig{});
69};
70
71} // namespace OpenMS
A container for consensus elements.
Definition ConsensusMap.h:67
Export protein group data to Apache Arrow format following QPX pg schema.
Definition ProteinGroupArrowExport.h:44
static bool exportToParquet(const ConsensusMap &cmap, const String &filename, const ParquetWriteConfig &config=ParquetWriteConfig{})
Export protein group data to Parquet file.
static std::shared_ptr< arrow::Table > exportToArrow(const ConsensusMap &cmap)
Export protein group data to Apache Arrow Table.
A more convenient string class.
Definition String.h:32
Main OpenMS namespace.
Definition openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19
Definition ArrowSchemaRegistry.h:18
Configuration for Parquet file writing.
Definition MSExperimentArrowExport.h:136