TMTThirtyFivePlexQuantitationMethod.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow, Julianus Pfeuffer $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>
 
namespace OpenMS{
    class OPENMS_DLLAPI TMTThirtyFivePlexQuantitationMethod : public IsobaricQuantitationMethod
    {
        public:
            TMTThirtyFivePlexQuantitationMethod();
            ~TMTThirtyFivePlexQuantitationMethod() override = default;
            TMTThirtyFivePlexQuantitationMethod(const TMTThirtyFivePlexQuantitationMethod& other);
 
            TMTThirtyFivePlexQuantitationMethod& operator=(const TMTThirtyFivePlexQuantitationMethod& rhs);
 
            const String& getMethodName() const override;
            const IsobaricChannelList& getChannelInformation() const override;
            Size getNumberOfChannels() const override;
            Matrix<double> getIsotopeCorrectionMatrix() const override;
            Size getReferenceChannel() const override;
        private:
            IsobaricChannelList channels_;
 
            static const String name_;
 
            Size reference_channel_;
            
            static const std::vector<std::string> channel_names_;
        
        protected:
            void setDefaultParams_();
 
            void updateMembers_() override;
    };
} // namespace OpenMS