Information about OpenMS' internal databases

This util prints the content of OpenMS' enzyme and modification databases to a TSV file. The command line parameters of this tool are:

stty: 'standard input': Inappropriate ioctl for device

OpenMSDatabasesInfo -- Prints the content of OpenMS' enzyme and modification databases to TSV
Full documentation: http://www.openms.de/doxygen/nightly/html/TOPP_OpenMSDatabasesInfo.html
Version: 3.4.0-pre-nightly-2024-12-16 Dec 17 2024, 02:41:12, Revision: 96ad74c
To cite OpenMS:
 + Pfeuffer, J., Bielow, C., Wein, S. et al.. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nat Methods (2024). doi:10.1038/s41592-024-02197-7.

Usage:
  OpenMSDatabasesInfo <options>

Options (mandatory options marked with '*'):
  -enzymes_out <out>*  Currently supported enzymes as TSV (valid formats: 'tsv')
  -mods_out <out>*     Currently supported modifications as TSV (valid formats: 'tsv')
                       
Common TOPP options:
  -ini <file>          Use the given TOPP INI file
  -threads <n>         Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>    Writes the default configuration file
  --help               Shows options
  --helphelp           Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+OpenMSDatabasesInfoPrints the content of OpenMS' enzyme and modification databases to TSV

version3.4.0-pre-nightly-2024-12-16 Version of the tool that generated this parameters file.

++1Instance '1' section for 'OpenMSDatabasesInfo'

enzymes_out Currently supported enzymes as TSVoutput file*.tsv

mods_out Currently supported modifications as TSVoutput file*.tsv

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue, false

forcefalse Overrides tool-specific checkstrue, false

testfalse Enables the test mode (needed for internal use only)true, false