XMLValidator

Validates XML files against an XSD schema.

When a schema file is given, the input file is simply validated against the schema.

When no schema file is given, the tool tries to determine the file type and validates the file against the latest schema version.

Note

XML schema files for the OpenMS XML formats and several other XML formats can be found in the folder OpenMS/share/OpenMS/SCHEMAS/

The command line parameters of this tool are:

stty: 'standard input': Inappropriate ioctl for device

XMLValidator -- Validates XML files against an XSD schema.
Full documentation: http://www.openms.de/doxygen/nightly/html/TOPP_XMLValidator.html
Version: 3.4.0-pre-nightly-2024-12-16 Dec 17 2024, 02:41:12, Revision: 96ad74c
To cite OpenMS:
 + Pfeuffer, J., Bielow, C., Wein, S. et al.. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nat Methods (2024). doi:10.1038/s41592-024-02197-7.

Usage:
  XMLValidator <options>

Options (mandatory options marked with '*'):
  -in <file>*        File to validate (valid formats: 'mzML', 'mzData', 'featureXML', 'mzid', 'idXML', 'consensusXML', 'mzXML', 'ini', 'pepXML', 'traML', 'xml')
  -schema <file>     Schema to validate against.
                     If no schema is given, the file is validated against the latest schema of the file type. (valid formats: 'xsd')
                     
Common TOPP options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+XMLValidatorValidates XML files against an XSD schema.

version3.4.0-pre-nightly-2024-12-16 Version of the tool that generated this parameters file.

++1Instance '1' section for 'XMLValidator'

in file to validateinput file*.mzML, *.mzData, *.featureXML, *.mzid, *.idXML, *.consensusXML, *.mzXML, *.ini, *.pepXML, *.traML, *.xml

schema schema to validate against.
If no schema is given, the file is validated against the latest schema of the file type.input file*.xsd

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue, false

forcefalse Overrides tool-specific checkstrue, false

testfalse Enables the test mode (needed for internal use only)true, false