OpenMS
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This is the complete list of members for ChromatogramExtractor, including all inherited members.
CMD enum value | ProgressLogger | |
current_logger_ | ProgressLogger | mutableprotected |
endProgress(UInt64 bytes_processed=0) const | ProgressLogger | |
extract_id_(TransitionExpT &transition_exp_used, const String &id, int &prec_charge) | ChromatogramExtractor | privatestatic |
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, const String &filter) | ChromatogramExtractor | inline |
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, double im_extraction_window, const String &filter) | ChromatogramExtractor | inline |
ExtractionCoordinates typedef | ChromatogramExtractor | |
getFilterNr_(const String &filter) | ChromatogramExtractor | private |
getLogType() const | ProgressLogger | |
GUI enum value | ProgressLogger | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
operator=(const ProgressLogger &other) | ProgressLogger | |
outsideExtractionWindow_(const ReactionMonitoringTransition &transition, double current_rt, const TransformationDescription &trafo, double rt_extraction_window) | ChromatogramExtractor | private |
PeptideRTMap_ | ChromatogramExtractor | private |
populatePeptideRTMap_(OpenMS::TargetedExperiment &transition_exp, double rt_extraction_window) | ChromatogramExtractor | private |
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenMS::TargetedExperiment &transition_exp, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0) | ChromatogramExtractor | static |
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenSwath::LightTargetedExperiment &transition_exp_used, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0) | ChromatogramExtractor | static |
prepareSpectra_(SpectrumSettingsT &settings, std::vector< ChromatogramT > &chromatograms, OpenMS::TargetedExperiment &transition_exp) | ChromatogramExtractor | inlineprivate |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
return_chromatogram(const std::vector< OpenSwath::ChromatogramPtr > &chromatograms, const std::vector< ChromatogramExtractor::ExtractionCoordinates > &coordinates, TransitionExpT &transition_exp_used, SpectrumSettings settings, std::vector< OpenMS::MSChromatogram > &output_chromatograms, bool ms1, double im_extraction_width=0.0) | ChromatogramExtractor | inlinestatic |
setLogger(ProgressLoggerImpl *logger) | ProgressLogger | |
setLogType(LogType type) const | ProgressLogger | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
type_ | ProgressLogger | mutableprotected |
~ProgressLogger() | ProgressLogger | virtual |