OpenMS
ConsensusMapMergerAlgorithm Member List

This is the complete list of members for ConsensusMapMergerAlgorithm, including all inherited members.

accessionEqual_(const ProteinHit &p1, const ProteinHit &p2)ConsensusMapMergerAlgorithminlineprivatestatic
accessionHash_(const ProteinHit &p)ConsensusMapMergerAlgorithminlineprivatestatic
check_defaults_DefaultParamHandlerprotected
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const String &experiment_type) constConsensusMapMergerAlgorithmprivate
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const ProteinIdentification &ref, const String &experiment_type) constConsensusMapMergerAlgorithmprivate
CMD enum valueProgressLogger
ConsensusMapMergerAlgorithm()ConsensusMapMergerAlgorithm
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress(UInt64 bytes_processed=0) constProgressLogger
equal_type typedefConsensusMapMergerAlgorithmprivate
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
hash_type typedefConsensusMapMergerAlgorithmprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
mergeAllIDRuns(ConsensusMap &cmap) constConsensusMapMergerAlgorithm
mergeProteinIDRuns(ConsensusMap &cmap, const std::map< unsigned, unsigned > &mapIdx_to_new_protIDRun) constConsensusMapMergerAlgorithm
mergeProteinsAcrossFractionsAndReplicates(ConsensusMap &cmap, const ExperimentalDesign &exp_design) constConsensusMapMergerAlgorithm
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
setLogger(ProgressLoggerImpl *logger)ProgressLogger
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLoggervirtual