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OpenMS
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This is the complete list of members for InspectOutfile, including all inherited members.
| compressTrieDB(const std::string &database_filename, const std::string &index_filename, std::vector< Size > &wanted_records, const std::string &snd_database_filename, const std::string &snd_index_filename, bool append=false) | InspectOutfile | |
| db_pos_length_ | InspectOutfile | protectedstatic |
| generateTrieDB(const std::string &source_database_filename, const std::string &database_filename, const std::string &index_filename, bool append=false, const std::string &species="") | InspectOutfile | |
| getACAndACType(std::string line, std::string &accession, std::string &accession_type) | InspectOutfile | |
| getExperiment(PeakMap &exp, std::string &type, const std::string &in_filename) | InspectOutfile | inline |
| getLabels(const std::string &source_database_filename, std::string &ac_label, std::string &sequence_start_label, std::string &sequence_end_label, std::string &comment_label, std::string &species_label) | InspectOutfile | |
| getPrecursorRTandMZ(const std::vector< std::pair< std::string, std::vector< std::pair< Size, Size > > > > &files_and_peptide_identification_with_scan_number, PeptideIdentificationList &ids) | InspectOutfile | |
| getSearchEngineAndVersion(const std::string &cmd_output, ProteinIdentification &protein_identification) | InspectOutfile | |
| getSequences(const std::string &database_filename, const std::map< Size, Size > &wanted_records, std::vector< std::string > &sequences) | InspectOutfile | |
| getWantedRecords(const std::string &result_filename, double p_value_threshold) | InspectOutfile | |
| InspectOutfile() | InspectOutfile | |
| InspectOutfile(const InspectOutfile &inspect_outfile) | InspectOutfile | |
| load(const std::string &result_filename, PeptideIdentificationList &peptide_identifications, ProteinIdentification &protein_identification, const double p_value_threshold, const std::string &database_filename="") | InspectOutfile | |
| operator=(const InspectOutfile &inspect_outfile) | InspectOutfile | |
| operator==(const InspectOutfile &inspect_outfile) const | InspectOutfile | |
| protein_name_length_ | InspectOutfile | protectedstatic |
| readOutHeader(const std::string &filename, const std::string &header_line, Int &spectrum_file_column, Int &scan_column, Int &peptide_column, Int &protein_column, Int &charge_column, Int &MQ_score_column, Int &p_value_column, Int &record_number_column, Int &DB_file_pos_column, Int &spec_file_pos_column, Size &number_of_columns) | InspectOutfile | |
| record_length_ | InspectOutfile | protectedstatic |
| score_type_ | InspectOutfile | protectedstatic |
| trie_db_pos_length_ | InspectOutfile | protectedstatic |
| trie_delimiter_ | InspectOutfile | protectedstatic |
| ~InspectOutfile() | InspectOutfile | virtual |