OpenMS
MzMLValidator Member List

This is the complete list of members for MzMLValidator, including all inherited members.

accession_att_SemanticValidatorprotected
ActionMode enum nameXMLHandlerprotected
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
binary_data_array_MzMLValidatorprotected
binary_data_type_MzMLValidatorprotected
characters(const XMLCh *const chars, const XMLSize_t) overrideSemanticValidatorprotected
check_term_value_types_SemanticValidatorprotected
check_units_SemanticValidatorprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandlerprotected
current_id_MzMLValidatorprotected
cv_SemanticValidatorprotected
cv_tag_SemanticValidatorprotected
cv_terms_XMLHandlerprotected
cvParamToValue(const ControlledVocabulary &cv, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession) constXMLHandlerprotected
cvParamToValue(const ControlledVocabulary &cv, const CVTerm &raw_term) constXMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideSemanticValidatorprotected
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
errors_SemanticValidatorprotected
expectList_(const String &str) constXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
file_XMLHandlerprotected
fromXSDString(const String &type, const String &value)XMLHandlerinlineprotectedstatic
fulfilled_SemanticValidatorprotected
getCVTerm_(const xercesc::Attributes &attributes, CVTerm &parsed_term)SemanticValidatorprotectedvirtual
getLoadDetail() constXMLHandlerprotectedvirtual
getPath_(UInt remove_from_end=0) const overrideMzMLValidatorprotectedvirtual
getVersion() constXMLFile
handleTerm_(const String &path, const CVTerm &parsed_term) overrideMzMLValidatorprotectedvirtual
isValid(const String &filename, std::ostream &os)XMLFile
LD_ALLDATA enum valueXMLHandlerprotected
LD_COUNTS_WITHOPTIONS enum valueXMLHandlerprotected
LD_RAWCOUNTS enum valueXMLHandlerprotected
LOAD enum valueXMLHandlerprotected
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandlerprotected
locateTerm(const String &path, const CVTerm &parsed_term) constSemanticValidator
mapping_SemanticValidatorprotected
MzMLValidator(const CVMappings &mapping, const ControlledVocabulary &cv)MzMLValidator
MzMLValidator()MzMLValidatorprivate
MzMLValidator(const MzMLValidator &rhs)MzMLValidatorprivate
name_att_SemanticValidatorprotected
open_tags_SemanticValidatorprotected
operator=(const MzMLValidator &rhs)MzMLValidatorprivate
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
param_groups_MzMLValidatorprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
reset()XMLHandlerprotected
rules_SemanticValidatorprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
SemanticValidator(const CVMappings &mapping, const ControlledVocabulary &cv)SemanticValidator
SemanticValidator()SemanticValidatorprivate
SemanticValidator(const SemanticValidator &rhs)SemanticValidatorprivate
setAccessionAttribute(const String &accession)SemanticValidator
setCheckTermValueTypes(bool check)SemanticValidator
setCheckUnits(bool check)SemanticValidator
setLoadDetail(const LOADDETAIL d)XMLHandlerprotectedvirtual
setNameAttribute(const String &name)SemanticValidator
setTag(const String &tag)SemanticValidator
setUnitAccessionAttribute(const String &accession)SemanticValidator
setUnitNameAttribute(const String &name)SemanticValidator
setValueAttribute(const String &value)SemanticValidator
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideMzMLValidatorprotected
STORE enum valueXMLHandlerprotected
unit_accession_att_SemanticValidatorprotected
unit_name_att_SemanticValidatorprotected
validate(const String &filename, StringList &errors, StringList &warnings)SemanticValidator
value_att_SemanticValidatorprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
warnings_SemanticValidatorprotected
writeTo(std::ostream &)XMLHandlerprotectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlineprotectedstatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandlerprotected
XMLHandler()XMLHandlerprivate
~MzMLValidator() overrideMzMLValidator
~SemanticValidator() overrideSemanticValidator
~XMLFile()XMLFilevirtual
~XMLHandler() overrideXMLHandlerprotected