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MSstatsFile Member List

This is the complete list of members for MSstatsFile, including all inherited members.

accdelim_MSstatsFileprivatestatic
aggregateInfo_(const ConsensusMap &consensus_map, const std::vector< String > &spectra_paths)MSstatsFileprivate
assembleRunMap_(std::map< std::pair< String, unsigned >, unsigned > &run_map, const ExperimentalDesign &design)MSstatsFileprivatestatic
checkConditionISO_(const ExperimentalDesign::SampleSection &sampleSection, const String &bioreplicate, const String &condition, const String &mixture)MSstatsFileprivatestatic
checkConditionLFQ_(const ExperimentalDesign::SampleSection &sampleSection, const String &bioreplicate, const String &condition)MSstatsFileprivatestatic
checkUnorderedContent_(const std::vector< String > &first, const std::vector< String > &second)MSstatsFileprivatestatic
constructFile_(const String &retention_time_summarization_method, const bool rt_summarization_manual, TextFile &csv_out, const std::set< String > &peptideseq_quantifyable, LineType &peptideseq_to_prefix_to_intensities) constMSstatsFileprivate
Coordinate typedefMSstatsFileprivate
delim_MSstatsFileprivatestatic
getAccessionToGroupMap_(const IndProtGrps &ind_prots)MSstatsFileprivatestatic
Intensity typedefMSstatsFileprivate
isQuantifyable_(const std::set< String > &accs, const std::unordered_map< String, const IndProtGrp * > &accession_to_group) constMSstatsFileprivate
meanIntensity_(const std::set< OpenMS::Peak2D::IntensityType > &intensities) constMSstatsFileinlineprivate
MSstatsFile()=defaultMSstatsFile
na_string_MSstatsFileprivatestatic
quote_MSstatsFileprivatestatic
storeISO(const String &filename, const ConsensusMap &consensus_map, const ExperimentalDesign &design, const StringList &reannotate_filenames, const String &bioreplicate, const String &condition, const String &mixture, const String &retention_time_summarization_method)MSstatsFile
storeLFQ(const String &filename, const ConsensusMap &consensus_map, const ExperimentalDesign &design, const StringList &reannotate_filenames, const bool is_isotope_label_type, const String &bioreplicate, const String &condition, const String &retention_time_summarization_method)MSstatsFile
sumIntensity_(const std::set< OpenMS::Peak2D::IntensityType > &intensities) constMSstatsFileinlineprivate
~MSstatsFile()=defaultMSstatsFile