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OpenMS
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This is the complete list of members for ProFormaParser, including all inherited members.
| advance_() | ProFormaParser | private |
| canCalculateMass(const Peptidoform &pf) | ProFormaParser | static |
| canCalculateMass(const PeptidoformIon &pfi) | ProFormaParser | static |
| canGenerateSpectrum(const Peptidoform &pf) | ProFormaParser | static |
| canGenerateSpectrum(const PeptidoformIon &pfi) | ProFormaParser | static |
| check_(ProFormaTokenizer::TokenType type) | ProFormaParser | private |
| createLookahead_() const | ProFormaParser | private |
| current_() | ProFormaParser | private |
| current_token_ | ProFormaParser | private |
| error_(ProFormaErrorCode code, const char *message) | ProFormaParser | private |
| errorAt_(ProFormaErrorCode code, size_t pos, const char *message) | ProFormaParser | private |
| expect_(ProFormaTokenizer::TokenType type, const char *expected_desc) | ProFormaParser | private |
| fromAASequence(const AASequence &seq) | ProFormaParser | static |
| generateSpectrum(const Peptidoform &pf, int min_charge=1, int max_charge=1, const std::string &ion_types="by", bool add_losses=false, bool add_metainfo=true) | ProFormaParser | static |
| generateSpectrum(const PeptidoformIon &pfi, int min_charge=1, int max_charge=1, const std::string &ion_types="by", bool add_losses=false, bool add_metainfo=true) | ProFormaParser | static |
| getAASequenceConversionIssues(const Peptidoform &pf) | ProFormaParser | static |
| getMassCalculationIssues(const Peptidoform &pf) | ProFormaParser | static |
| getMassCalculationIssues(const PeptidoformIon &pfi) | ProFormaParser | static |
| getMonoWeight(const Peptidoform &pf) | ProFormaParser | static |
| getMonoWeight(const PeptidoformIon &pfi) | ProFormaParser | static |
| getMZ(const PeptidoformIon &pfi) | ProFormaParser | static |
| getMZ(const Peptidoform &pf, int charge) | ProFormaParser | static |
| getSpectrumGenerationIssues(const Peptidoform &pf) | ProFormaParser | static |
| getSpectrumGenerationIssues(const PeptidoformIon &pfi) | ProFormaParser | static |
| has_current_ | ProFormaParser | private |
| hasNTerminalModPattern_() | ProFormaParser | private |
| input_ | ProFormaParser | private |
| isAminoAcid_(char c) | ProFormaParser | privatestatic |
| isAtEnd_() | ProFormaParser | private |
| isRepresentableAsAASequence(const Peptidoform &pf) | ProFormaParser | static |
| looksLikeModificationTagContent_() | ProFormaParser | private |
| match_(ProFormaTokenizer::TokenType type) | ProFormaParser | private |
| parse(const String &input) | ProFormaParser | static |
| parseAdductIon_() | ProFormaParser | private |
| parseAdductIons_() | ProFormaParser | private |
| parseAmbiguousRegion_() | ProFormaParser | private |
| parseChargeState_() | ProFormaParser | private |
| parseCvAccession_() | ProFormaParser | private |
| parseCvDatabasePrefix_(const std::string_view &id) | ProFormaParser | private |
| parseFormulaTag_() | ProFormaParser | private |
| parseGlobalModEntry_() | ProFormaParser | private |
| parseGlobalModification_() | ProFormaParser | private |
| parseGlobalMods_() | ProFormaParser | private |
| parseGlycanComposition_() | ProFormaParser | private |
| parseInfoTag_() | ProFormaParser | private |
| parseIon(const String &input) | ProFormaParser | static |
| parseIsotopeReplacement_() | ProFormaParser | private |
| parseLabel_() | ProFormaParser | private |
| parseLabileModifications_() | ProFormaParser | private |
| parseMassDelta_() | ProFormaParser | private |
| parseModification_() | ProFormaParser | private |
| parseModificationList_() | ProFormaParser | private |
| parseModificationTag_() | ProFormaParser | private |
| parseModificationTagWithLabel_() | ProFormaParser | private |
| parseModifiedRange_() | ProFormaParser | private |
| parseNamedMod_() | ProFormaParser | private |
| parseNamedMod_(char cv_hint) | ProFormaParser | private |
| parsePeptidoform_() | ProFormaParser | private |
| parsePeptidoformIon_() | ProFormaParser | private |
| parsePeptidoformWithCharge_(bool is_chimeric_context) | ProFormaParser | private |
| parsePositionConstraint_() | ProFormaParser | private |
| parseSequence_() | ProFormaParser | private |
| parseSequenceElement_() | ProFormaParser | private |
| parseTerminalMods_() | ProFormaParser | private |
| parseUnlocalisedMods_() | ProFormaParser | private |
| peek_() | ProFormaParser | private |
| ProFormaParser(std::string_view input) | ProFormaParser | explicitprivate |
| resolveModifications(Peptidoform &pf) | ProFormaParser | static |
| toAASequence(const Peptidoform &pf, AASequenceConversionPolicy policy=AASequenceConversionPolicy::FAIL_ON_LOSS) | ProFormaParser | static |
| tokenizer_ | ProFormaParser | private |
| toString(const Peptidoform &pf, ProFormaWriteMode mode=ProFormaWriteMode::LOSSLESS) | ProFormaParser | static |
| toString(const PeptidoformIon &pfi, ProFormaWriteMode mode=ProFormaWriteMode::LOSSLESS) | ProFormaParser | static |
| tryGetMonoWeight(const Peptidoform &pf) | ProFormaParser | static |
| tryGetMonoWeight(const Peptidoform &pf, std::vector< ConversionIssue > &issues_out) | ProFormaParser | static |
| tryGetMonoWeight(const PeptidoformIon &pfi) | ProFormaParser | static |
| tryGetMonoWeight(const PeptidoformIon &pfi, std::vector< ConversionIssue > &issues_out) | ProFormaParser | static |
| tryGetMZ(const Peptidoform &pf, int charge) | ProFormaParser | static |
| tryGetMZ(const Peptidoform &pf, int charge, std::vector< ConversionIssue > &issues_out) | ProFormaParser | static |
| tryGetMZ(const PeptidoformIon &pfi) | ProFormaParser | static |
| tryGetMZ(const PeptidoformIon &pfi, std::vector< ConversionIssue > &issues_out) | ProFormaParser | static |
1.9.8 